View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_5 (Length: 421)
Name: NF11070_low_5
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 84 - 406
Target Start/End: Original strand, 29294339 - 29294663
Alignment:
| Q |
84 |
aaatttgtaggtactaaagtaaaaataaatttctagagtgtgttatctcaaatagttatccatgccaaacagtacaacaccttttaatataacatgacat |
183 |
Q |
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| T |
29294339 |
aaatttgtaggtactaaagtaaaaataaatttctagagtgtgttatctcaaatagttatccatgccaaacagtacaacaccttttaatataacatgacat |
29294438 |
T |
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| Q |
184 |
tcaatttaaacccctaatattgggtcgaatttgaatggttcatatatatctacaacttttggtgttatgattactgtgcatttctctctctgtagaaaac |
283 |
Q |
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| T |
29294439 |
tcaatttaaacctctaatattgggtccaatttcaatggttcatatatatctacaacttttggtgttatgattactgtgcatttctctctctgtagaaaac |
29294538 |
T |
|
| Q |
284 |
tctcctacacacataccctacctgcttaattttcctcta--atatattcttttagctaaataaattggtgtatttatgacactttggcaggcatatactc |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29294539 |
tctcctacacacataccctacctgcttaattttcctctaatatatattcttttagctaaataaattggtgtatttatgacactttggcaggcatatactc |
29294638 |
T |
|
| Q |
382 |
agtaaatgtggaccattgtcaacaa |
406 |
Q |
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||||||||||||||||||||||||| |
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| T |
29294639 |
agtaaatgtggaccattgtcaacaa |
29294663 |
T |
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