View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_8 (Length: 326)
Name: NF11070_low_8
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 37577812 - 37578093
Alignment:
| Q |
20 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
119 |
Q |
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| T |
37577812 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
37577911 |
T |
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| Q |
120 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37577912 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
37578011 |
T |
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| Q |
220 |
aacattgaatgtaagcatttcaannnnnnngagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37578012 |
aacattgaatgtaagcatttcaatttttttgagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
37578093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 37583935 - 37584216
Alignment:
| Q |
20 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
119 |
Q |
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| T |
37583935 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
37584034 |
T |
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| Q |
120 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
219 |
Q |
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| T |
37584035 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
37584134 |
T |
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| Q |
220 |
aacattgaatgtaagcatttcaannnnnnngagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584135 |
aacattgaatgtaagcatttcaatttttttgagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
37584216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 37585071 - 37585352
Alignment:
| Q |
20 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585071 |
gagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatgg |
37585170 |
T |
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| Q |
120 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
219 |
Q |
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| T |
37585171 |
ttggaattgtgttgggattggccaactcggttgtttgcatcttcatacgttccatatcatgtgctgctccttctagagtccagcttttagcttaatttgt |
37585270 |
T |
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| Q |
220 |
aacattgaatgtaagcatttcaannnnnnngagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585271 |
aacattgaatgtaagcatttcaatttttttgagaaagccttcaacactatcctaaaggaaattctagtaatgtatataagaa |
37585352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 3104039 - 3103904
Alignment:
| Q |
23 |
ggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcaggtgatggttg |
122 |
Q |
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|||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||| |||||||||| | ||| |
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| T |
3104039 |
ggtggtacaactccagctgcaatcatgaaaatcaacggtggaa------gaaggatcatctgtggccgtccgattccgaggcggggtcaggtgaagcttg |
3103946 |
T |
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| Q |
123 |
gaattgtgttgggattggccaactcggttgtttgcatcttca |
164 |
Q |
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| T |
3103945 |
gaattgtgttgggattagccaactcagttgtttgcatcttca |
3103904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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