View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11071_high_1 (Length: 352)
Name: NF11071_high_1
Description: NF11071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11071_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 5655014 - 5655192
Alignment:
| Q |
11 |
caaaggcaacaattttatatttggcctaaatgcactttggttgcccctattttcatttttctgaagtttggtacccctatttcaaaattcagttttttgg |
110 |
Q |
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| T |
5655014 |
caaaggcaacaattttatatttggcctaaatgcactttggttccccctattttcatttttctgaagtttggtacccttatttaaaaattcagttttttgg |
5655113 |
T |
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| Q |
111 |
tccccttatttcaattttttctaactgttgattccccaaccccactacaaaagacatgacttttagtaacagaaaatttt |
190 |
Q |
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| T |
5655114 |
tccccttatttcaa-tttttctaactattgattccccaaccccactacaaaagacttgacttttagtaacagaaaatttt |
5655192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 5655343 - 5655494
Alignment:
| Q |
189 |
ttcgtaagttctgattcagctctatcactacggatcaaatccgtaggtaaaaccaaactcgcttttttcat--aatnnnnnnnntctgaaactctctaaa |
286 |
Q |
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| T |
5655343 |
ttcgtaagttctgattcagctctatcactacggatcaaatccgtaggtaaaaccaaactcgcttttttcattaaaaaaaaaaaatctgaaactctctaaa |
5655442 |
T |
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| Q |
287 |
tattttcaaatcctcaaaccatccaaataaactccttcataccctttgatgt |
338 |
Q |
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| T |
5655443 |
tgttttcaaatcctcaaaccatccaaataaactccttcataccctttgatgt |
5655494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 43606680 - 43606770
Alignment:
| Q |
37 |
taaatgcactttggttgcccctattttcatttttctgaagttt-ggtacccctatttcaaaattcagttttttggtccccttatttcaattt |
127 |
Q |
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| T |
43606680 |
taaatgcacttttgatacccctattttcattcttctgaagtttcgttacacctatttttaaattcaactttttgg-ccccttatttcaattt |
43606770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 40704818 - 40704924
Alignment:
| Q |
41 |
tgcactttggttgcccctattttcatttttctgaagttt-ggtacccctatttcaaaattcagttttttggtccccttatttcaattttttctaactgtt |
139 |
Q |
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|||||||| | |||||| ||||| |||| | |||||||| ||||||||||||| ||||||||| ||||| ||||| |||||| | ||||||||||| || |
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| T |
40704818 |
tgcacttttggtgcccccatttttatttatttgaagttttggtacccctattttaaaattcag-tttttcatccccctatttc-agtttttctaactttt |
40704915 |
T |
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| Q |
140 |
gattcccca |
148 |
Q |
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| T |
40704916 |
gatccccca |
40704924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 10901121 - 10901057
Alignment:
| Q |
77 |
tttggtacccctatttcaaaattcagttttttggtccccttatttcaattttttctaactgttgat |
142 |
Q |
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| T |
10901121 |
tttgatacccatatttttaaattcagtttcttggccccct-atttcaattttttctaacttttgat |
10901057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 40137664 - 40137561
Alignment:
| Q |
87 |
ctatttcaaaattcagttttttggtccccttatttcaattttttctaactgttgattccccaaccccactacaaaagacatgacttttagtaacagaaaa |
186 |
Q |
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| T |
40137664 |
ctattttaaaattctgctttttgatccatttattttaattttttctaacttttgattcacc-gccccgttacaaaaaacttgaattttagtgacagtaaa |
40137566 |
T |
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| Q |
187 |
ttttc |
191 |
Q |
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||||| |
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| T |
40137565 |
ttttc |
40137561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 33094710 - 33094665
Alignment:
| Q |
87 |
ctatttcaaaattcagttttttggtccccttatttcaattttttct |
132 |
Q |
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| T |
33094710 |
ctattttaaaattcagttctttggtccacttaattcaattttttct |
33094665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 2897392 - 2897332
Alignment:
| Q |
54 |
cccctattttcatttttctgaagtttggtacccctatttcaaaattcagttttttggtccc |
114 |
Q |
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| T |
2897392 |
cccctacttttatttttatgaagttttgttcccctattttgaaatttagttttttggtccc |
2897332 |
T |
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