View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11071_high_5 (Length: 257)
Name: NF11071_high_5
Description: NF11071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11071_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28524430 - 28524250
Alignment:
| Q |
1 |
caatttatatataaacgttatttcccatgtttcaatagttacttttattccttaaaataataaaatagtacgtgtgattttgttaagattaaccttgtat |
100 |
Q |
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| T |
28524430 |
caatttatatataaactttatttcccatgtttcaatagttacttttattccttaaaataa---aatagtacgtgtgattttgttaagattaaccatgtat |
28524334 |
T |
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| Q |
101 |
ttccaccatttctactagacatttgatatatgtgtagcaccgacatttctgacggaacttggaaggtgtaccggtgtcagacac |
184 |
Q |
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| T |
28524333 |
ttccaccatttctactagacatttgatatatgtgtagcaccgacatttctgacggaacttggaaggtgtaccggtgtcagacac |
28524250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 28524221 - 28524182
Alignment:
| Q |
211 |
caaattcttatggttgtatcagtgtcgtcgtgttgatgtc |
250 |
Q |
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| T |
28524221 |
caaattcttacggttgtatcagtgccgtcgtgttgatgtc |
28524182 |
T |
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