View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11071_low_2 (Length: 326)
Name: NF11071_low_2
Description: NF11071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11071_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 41470148 - 41469849
Alignment:
| Q |
21 |
gtgggactcctaagaaactccaaacaacttcaataaacaatactttttgtgattggtccacttttaaagaagccgatttagttctataaaatgatgactt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41470148 |
gtgggactcctaagaaactccaaacaacttcaataaacaatactttttgtgattggtccacttttaaagaagccgatttagttctgtaaaatgatgactt |
41470049 |
T |
|
| Q |
121 |
tcaaaaaatgtgttgagattttaagaagtagacctatcagaaaaagtgtgttcaagagagcgttaaaaagagataattactcatttagcattgctaccat |
220 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41470048 |
tcaaaaaatgtgttgggattttaagaagtagacctatcagaaaaagtgtgttcaagagagcattaaaaagagataattactcatttagcattgctaccat |
41469949 |
T |
|
| Q |
221 |
aaatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagattcttctcac |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
41469948 |
aaatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagatccttttcac |
41469849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 320
Target Start/End: Complemental strand, 41477123 - 41476861
Alignment:
| Q |
62 |
actttttgtgattggtccacttttaaagaagccgatttagttcta---taaaatgatgactttcaaaa-aatgtgttgagattttaagaagtagacctat |
157 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||| |||| |||| ||||||||| |||||||| ||||||||| ||||||||| |
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| T |
41477123 |
actttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagtaatgtgttatatttttaagaaatagacctat |
41477024 |
T |
|
| Q |
158 |
cagaaaaagtgtgttcaagagagcgttaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtct |
257 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| | |||||| |||| | ||||||| | ||| |
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| T |
41477023 |
cagaaaaagtgtgttcaagagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttct |
41476924 |
T |
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| Q |
258 |
gaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagattcttctcac |
320 |
Q |
| |
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|| |||| |||| |||||||| || ||||||| |||||| ||||||||||| ||| |||| |
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| T |
41476923 |
caagatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcac |
41476861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 40751384 - 40751110
Alignment:
| Q |
56 |
aacaatactttttgtgattggtccacttttaaagaagccgatttagtt---ctataaaatgatgactttcaaa-aaatgtgttgagattttaagaagtag |
151 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||||| |||||||| || |||| |||| ||||||||| ||||||||| | ||||| |||| || |
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| T |
40751384 |
aacaacactttttgtgattggtccatttttaaagaagccaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttt-agaaacag |
40751286 |
T |
|
| Q |
152 |
acctatca-gaaaaagtgtgttcaagagagcg-------ttaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaat |
243 |
Q |
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| |||||| ||||||||||||| ||||||| | |||||| |||| ||||| |||| ||||||||||||||||||| | |||||| |||| | || |
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| T |
40751285 |
a-ctatcaggaaaaagtgtgtttaagagagggttaaaacttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacat |
40751187 |
T |
|
| Q |
244 |
tacatggcccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagattcttctcac |
320 |
Q |
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|||||| | ||| ||||||| |||| ||||||| ||| ||||||| |||||| |||||| |||| |||||||| |
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| T |
40751186 |
tacatgtttcttctcaaaatatagcttggttctctcattgtgattatctgcttgacgcttctgtagatccttctcac |
40751110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 41484170 - 41484000
Alignment:
| Q |
56 |
aacaatactttttgtgattggtccacttttaaagaagccgatttagttcta---taaaatgatgactttcaaa-aaatgtgttgagattttaagaagtag |
151 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| |||||||||| |||| |||| ||||||||| ||||||||| | |||||| ||| | | |
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| T |
41484170 |
aacaacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattg |
41484072 |
T |
|
| Q |
152 |
acctatcagaaaaagtgtgttcaagagagcgttaaaaagagataattactcatttagcattgctaccataaat |
224 |
Q |
| |
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|||||||| |||| ||||||||| ||||| ||||||| |||| ||| | |||||||||||||||| ||||||| |
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| T |
41484071 |
acctatcacaaaa-gtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaat |
41484000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 16413069 - 16413343
Alignment:
| Q |
23 |
gggactcctaagaaactccaaacaacttcaataaacaatactttttgtgattggtccacttttaaagaagccgatttagttctataaa-atgatgacttt |
121 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
16413069 |
gggactcctaagaaactccagacaacctcaataaacaacactttttgtgattggtccacttttaaagaagccgatttagttctgtaaatttgatgacttt |
16413168 |
T |
|
| Q |
122 |
caaaaaatgtgttgagattttaagaagtagacctatcagaaaaagtgtgttcaagagagcgttaaaaagagataattactcatttagcattgctaccata |
221 |
Q |
| |
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||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
16413169 |
caaaaaatgtgctaagattttaagaaatagacctatcaaaaaaagtgtgttcaagagag--------------aattactc-tttagcattgctaccata |
16413253 |
T |
|
| Q |
222 |
aatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagat |
311 |
Q |
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||| | ||||||||||| |||||||||| || ||||||||| ||||||||||| | |||| |||||||||||| | ||||||||||| |
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| T |
16413254 |
aattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgcttctgcagat |
16413343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 16408800 - 16408839
Alignment:
| Q |
152 |
acctatcagaaaaagtgtgttcaagagagcgttaaaaagaga |
193 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
16408800 |
acctatcagaaaaagtgtgttcaagaga--gttaaaaagaga |
16408839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 52472101 - 52472000
Alignment:
| Q |
210 |
attgctaccataaatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcag |
309 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||| || | ||| || |||| ||||||| ||||| ||| ||||||| |||||| ||||||||| |
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| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
|
| Q |
310 |
at |
311 |
Q |
| |
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|| |
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|
| T |
52472001 |
at |
52472000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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