View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11071_low_4 (Length: 265)
Name: NF11071_low_4
Description: NF11071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11071_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 33488739 - 33488495
Alignment:
| Q |
6 |
agatttgacagaggccacctgaatgaaatatcatcaaagtggaaccttaaaatagtgatattatatagaatgaaagtgatcttatttttagtttaatgtg |
105 |
Q |
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| T |
33488739 |
agatttgacagaggccacctgaatgaaatatcatcaaagtggaaccttaaaatagtgatattatatagaatgaaagagatcttatttttagtttaatgtg |
33488640 |
T |
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| Q |
106 |
ttatttttcaagaggttaggtgtatgaaagggaaaaccactatagttttatgaatcttagaaaatggttgaagaggagttggaatccactcatagtgctt |
205 |
Q |
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| T |
33488639 |
ttatttttcaagaggttaggtgtatgaaagggaaacccactatagttttatgaatcttagaaaattgttgaagaggagttggaatccactcatagtgctt |
33488540 |
T |
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| Q |
206 |
gatttgaataagacattgagatactacttaatggggacaccaaac |
250 |
Q |
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| T |
33488539 |
gatttgaataagacattgagatactacttaatggggacaccaaac |
33488495 |
T |
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