View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_high_11 (Length: 266)
Name: NF11072_high_11
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 52457788 - 52457885
Alignment:
| Q |
66 |
caacttaattatctacatccttgggccttctcctccatatacggcattcagagccttgtaacttccagctcatggtatgaaggcaatccagtatggta |
163 |
Q |
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| T |
52457788 |
caacttaattatctacatccttcggccttctcctccatatacggcattcaaagccttgtaacttccagctcatggtatgaaggcaatccagtatggta |
52457885 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 33614508 - 33614605
Alignment:
| Q |
69 |
cttaattatctacatccttgggccttctcctccatatacggcattcagagccttgtaacttccagctcatggtatgaaggcaatccagtatggtagct |
166 |
Q |
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| T |
33614508 |
cttaattatctacatccttgaggcttctcctccatacacagcattcagagccttattacttccagctcatggtatggaggcaatcggttatggtagct |
33614605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 33614632 - 33614692
Alignment:
| Q |
183 |
cttctcctccatatatgcagcttaatttcatgtgtgcgagagaaattttccattttgcttc |
243 |
Q |
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| T |
33614632 |
cttctgctccatatatgcagcttaatttcatgtgtgcaaaagagtttttctattttgcttc |
33614692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 22644309 - 22644343
Alignment:
| Q |
182 |
gcttctcctccatatatgcagcttaatttcatgtg |
216 |
Q |
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| T |
22644309 |
gcttctcctacatatatgcagcttaatttcatgtg |
22644343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 38674812 - 38674886
Alignment:
| Q |
183 |
cttctcctccatatatgcagcttaatttcatgtgtgcgagagaaattttccattttgcttcttcatccttcatct |
257 |
Q |
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| T |
38674812 |
cttctccttcatatatgcagcttaatttcatgtgtgtgagagagtttttctattttgcttcctcatccttcatct |
38674886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 38674752 - 38674804
Alignment:
| Q |
82 |
atccttgggccttctcctccatatacggcattcagagccttgtaacttccagc |
134 |
Q |
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| T |
38674752 |
atcctttggccttctcctccatatacggcattcatagccttataacttccagc |
38674804 |
T |
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