View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11072_high_2 (Length: 435)
Name: NF11072_high_2
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 32 - 301
Target Start/End: Original strand, 23193832 - 23194096
Alignment:
| Q |
32 |
gaagcaagtttaacattacttcattgaatggagatttgaaccctcttctttatagggacatcattccatctcctcctcctcataccttatgggatggaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23193832 |
gaagcaagtttaacattacttcattgaatggagatttgaaccctcttctttatagggacatcattccatctcctcctcctcataccttatgggatggaaa |
23193931 |
T |
|
| Q |
132 |
tttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23193932 |
tttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaac-----taatgtcaaggtgta |
23194026 |
T |
|
| Q |
232 |
tcaagaagacttctttagaaagttacaaatttcgatgatggttagttgctttattttgagtttggttttg |
301 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23194027 |
tcaacaagacttctttagaaagttacagatttagatgatggttagttgctttattttgagtttggttttg |
23194096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 295 - 416
Target Start/End: Original strand, 23202814 - 23202935
Alignment:
| Q |
295 |
ggttttgttgttagtcgtgttattgaatcacactcttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgtcc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23202814 |
ggttttgttgttagtcgtgttattgaatcaaactctttaccttcatgaggttttatcctactaggttttcttgataagatttttaacgaggcagttttcc |
23202913 |
T |
|
| Q |
395 |
aaattctttgtagttttcttgg |
416 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23202914 |
aaattctttgtagttttcttgg |
23202935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 37027704 - 37027667
Alignment:
| Q |
71 |
accctcttctttatagggacatcattccatctcctcct |
108 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
37027704 |
accctcttctctatagggacaacattccatctcctcct |
37027667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 142 - 343
Target Start/End: Original strand, 32254776 - 32254973
Alignment:
| Q |
142 |
cttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgtatc-aagaaga |
240 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
32254776 |
cttctctataaggacagctatgttccagctcttccttctcctcatcctaattaaatgttgaaattcaaactgtattaatatcaaggtgtatcaaagaaaa |
32254875 |
T |
|
| Q |
241 |
cttctttagaaagttacaaatttcgatgatggttagttgctttattttgagtttggttttgttgttagtcgtgttattgaatcacactcttttccttcat |
340 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||| |||||| || |||||||||| ||||||||| |||||| |
|
|
| T |
32254876 |
cttctttagaaagttatagatttagatgatggttagttgttttattttgagtttggtcttgttgcta-----gttattgaattgcactctttttcttcat |
32254970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 32236235 - 32236403
Alignment:
| Q |
44 |
acattacttcattgaatggagatttgaaccctcttctttatagggacatcattccatctcctcctcctcataccttatgggatggaaatttccaacctct |
143 |
Q |
| |
|
||||||| |||||||| ||| ||| || |||||||| ||| ||||| ||||||||||||| || |||| |||||||||||||||||| ||||| |
|
|
| T |
32236235 |
acattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttct------acctcatgggatggaaatttccaccctct |
32236328 |
T |
|
| Q |
144 |
tctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactgtatta |
218 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32236329 |
tctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttgtatta |
32236403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 32248429 - 32248597
Alignment:
| Q |
44 |
acattacttcattgaatggagatttgaaccctcttctttatagggacatcattccatctcctcctcctcataccttatgggatggaaatttccaacctct |
143 |
Q |
| |
|
||||||| |||||||| ||| ||| || |||||||| ||| ||||| ||||||||||||| || |||| |||||||||||||||||| ||||| |
|
|
| T |
32248429 |
acattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttct------acctcatgggatggaaatttccaccctct |
32248522 |
T |
|
| Q |
144 |
tctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactgtatta |
218 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32248523 |
tctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttgtatta |
32248597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 32254610 - 32254729
Alignment:
| Q |
33 |
aagcaagtttaacattacttcattgaatggagatttgaaccctcttctttatagggacatcattccatctcctcctcctcataccttatgggatggaaat |
132 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||| ||||||||||| |||| ||||| ||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
32254610 |
aagcaactttgacattacctcattgaatggagattccaaccctcttctctataaggacaacattccatcccctcctcctcctac---atgggatggaaat |
32254706 |
T |
|
| Q |
133 |
ttccaacctcttctctataagga |
155 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
32254707 |
ttccaccctcttctctataagga |
32254729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 21847814 - 21847752
Alignment:
| Q |
330 |
ttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgt |
392 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
21847814 |
ttttccttcatcaagttttatctcaatagattttcttgttaaggtttttaatgaggcagttgt |
21847752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 26196750 - 26196782
Alignment:
| Q |
358 |
gattttcttgataagatttttaacgaggcagtt |
390 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
26196750 |
gattttcctgataagatttttaacgaggcagtt |
26196782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University