View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_high_3 (Length: 418)
Name: NF11072_high_3
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 38723624 - 38723880
Alignment:
| Q |
19 |
cagagaaagaccattatggaaaagagatataggaatgttagtggcaatgtgcaaggtcttgatcctaagctgaagaaagctgagagtaataaagttagat |
118 |
Q |
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| T |
38723624 |
cagagaaagaccattatggaaaagagatataggaatgttagtggcaatgtgcaaggtcttgatcctaagctgaagaaagctgagagtaataaagttagat |
38723723 |
T |
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| Q |
119 |
taacagttagtcaagatggttcagctcaatttaagagtattacagaagctcttaatagcattcaaccttataacattagaagagtgattatctccattgc |
218 |
Q |
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| T |
38723724 |
taaaagttagtcaagatggttcagctcaatttaagagtattacagaagctcttaatagcattcaaccttataacattagaagagtgattatctccattgc |
38723823 |
T |
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| Q |
219 |
accgggttactataggtacgaatatgctcactataactc-aaactgttttatttttt |
274 |
Q |
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| T |
38723824 |
accgggttactataggtacgaatatgctgactataactcaaaactgttttatttttt |
38723880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 38723914 - 38724040
Alignment:
| Q |
273 |
ttataacttgtgatgatcaattgatttcagggagaaaattgtagtcccaaaaacactccctttcataacattcctaggggacgtaagggatccaccaact |
372 |
Q |
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| T |
38723914 |
ttataacttgtgatgattaattgatttcagggagaaaattgtagtcccaaaaacactccctttcataacattcctaggggacgtaagggatccaccaact |
38724013 |
T |
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| Q |
373 |
ataactggaaatgatacacaatctgtc |
399 |
Q |
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| T |
38724014 |
ataactggaaatgatacacaatctgtc |
38724040 |
T |
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