View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_high_4 (Length: 349)
Name: NF11072_high_4
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 35399119 - 35399426
Alignment:
| Q |
17 |
attatatgctttatttattttccttacattccaaccagctagctacttccattgctcaaaacacaaattaaaagaaaccttaccacttagggttttcccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35399119 |
attatatgctttatttattttccttacattccaaccagctagctacttccattgctcaaaacacaaattaaaagaaaccttaccacgtagggttttcccc |
35399218 |
T |
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| Q |
117 |
ctcatcatcaacagatacatttggatcaacaaataatagtcagttgcaaagttgatccaggattcttcaaagatataataggctttattggatcttggaa |
216 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35399219 |
ctcatcattaacagatacatttggatcaacaaatatgagtcagttgcaaagttgatccaggattcttcaaagatataat-cgctttattggatcttggaa |
35399317 |
T |
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| Q |
217 |
acaaaatttggctatatagcactttcttccaatcatctgtagaagttatcttggaagtgagttgttaagcttcaccctccctcatcaatggtttgcacat |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35399318 |
acaaaatttggctatatagcaccttcttccaatcatctgtagaagttatcttggaagtgagttgttaagcttcaccctccctcatcaatggtttgcacat |
35399417 |
T |
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| Q |
317 |
atttacata |
325 |
Q |
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|| |||||| |
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| T |
35399418 |
atctacata |
35399426 |
T |
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