View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_high_5 (Length: 341)
Name: NF11072_high_5
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_high_5 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 4566783 - 4567092
Alignment:
| Q |
19 |
cgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttac |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
4566783 |
cgagtttcatgcattagtttctcttattaaatctaatttagttttacatcccaactttaagatttaatttgttaggcgataaacgaacatgattgctcac |
4566882 |
T |
|
| Q |
119 |
attcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
218 |
Q |
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|||||| ||||| ||| ||||||| | |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4566883 |
attcttgttagaacggcatgttattagattagttaccatatatttgagatttatcctcttcatattgattctattttaagtaatgatatgaattaagttt |
4566982 |
T |
|
| Q |
219 |
acgtt-gatnnnnnnnnntctcaaatatacttgtcgaggataagaaactttaggccctataatcttaa-atatagtatgataacataatacctaatcaac |
316 |
Q |
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|| || | |||||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
4566983 |
actttcgtaaaaaaaaaatctcaattatacttgtcgaggataagaaactttaggccataggatcttaacatataatatgataacataatacctaatcaac |
4567082 |
T |
|
| Q |
317 |
ctaatctgtg |
326 |
Q |
| |
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|||||||||| |
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| T |
4567083 |
ctaatctgtg |
4567092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 8670342 - 8670144
Alignment:
| Q |
19 |
cgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttac |
118 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||| | |||||||||||| || | |||||| ||||| || |
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| T |
8670342 |
cgagtttcatgcattagtt-ctcttattaagtctattttagttttacatcccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctcac |
8670244 |
T |
|
| Q |
119 |
attcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
218 |
Q |
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| T |
8670243 |
actcttactagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgtattgactctattttaagtaaatatatgaattaagttt |
8670144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 13280 - 13478
Alignment:
| Q |
20 |
gagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttaca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| | |||||||| ||| ||||||||||| |||| || |
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| T |
13280 |
gagtttcatgcattagtttctcttattaagtctattttagttttacatcccaactttgaggtaaagtttgttagacgacaagcgaacatggctgct--ca |
13377 |
T |
|
| Q |
120 |
ttcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttta |
219 |
Q |
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|||| ||| | ||| |||| |||||||||||||||| |||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
13378 |
ctcttgctagggcggcctgttcttgggctagtcaccgtgtctttgagatttgtcctccttgtattgactatattttaagtaatgatatgaattaagttta |
13477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 49525223 - 49525024
Alignment:
| Q |
19 |
cgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttac |
118 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||| |||| | |||||||||||| ||||||||||| |||| || |
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| T |
49525223 |
cgagtttcatgcattagtttcttttattaagtctattttagttttacattccaattttgaggtaaagtttgttaggcgacaagcgaacatggctgctcac |
49525124 |
T |
|
| Q |
119 |
attcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
218 |
Q |
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| ||| ||| | || |||| |||| ||||||||| ||| |||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
49525123 |
acccttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattgactctattttaagtaatgatatgcattaagttt |
49525024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 33582848 - 33583044
Alignment:
| Q |
19 |
cgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttac |
118 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| |||||| ||||||||||| |||| || |
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| T |
33582848 |
cgagtttcatgtcttagtttctcttattaagtctattttagttttacatcctaactttgaggtaaagttt---aggcgacaagcgaacatggctgctcac |
33582944 |
T |
|
| Q |
119 |
attcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
218 |
Q |
| |
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| |||| || | |||||||| |||||||||||| ||||| |||||||||| |||| || ||||||||||||||||| |||||||||||||||||||| |
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| T |
33582945 |
actcttgctaaggcggcttgttcttgggctagtcatcgtatatttgagatttgtcctgcttgtattgattctattttaaataatgatatgaattaagttt |
33583044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 32399426 - 32399279
Alignment:
| Q |
23 |
tttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttacattc |
122 |
Q |
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|
||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| | |||||||||| | || | |||||| |||| ||| || |
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| T |
32399426 |
tttcatgcattagtttctcttattaagtctattttaattttacatcccaactttgaggtaaagtttgttaggcaacaaacaaacatggctgctcacactc |
32399327 |
T |
|
| Q |
123 |
ttattagagtggcttgttattgggctagtcaccgtatctttgagattt |
170 |
Q |
| |
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||| | | | ||| |||||||||| || ||||||||||||||| |||| |
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|
| T |
32399326 |
ttacttgggcggcatgttattgggttaatcaccgtatctttgaaattt |
32399279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 44655092 - 44655125
Alignment:
| Q |
181 |
tattgattctattttaagtaatgatatgaattaa |
214 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
44655092 |
tattgactctattttaagtaatgatatgaattaa |
44655125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 22573137 - 22573085
Alignment:
| Q |
172 |
tcctcctcatattgattctattttaagtaatgatatgaattaagtttacgttg |
224 |
Q |
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||||||| ||||||| | |||||||| |||||||||||||||| ||| ||||| |
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| T |
22573137 |
tcctccttatattgactttattttaaataatgatatgaattaaatttgcgttg |
22573085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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