View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11072_low_1 (Length: 534)
Name: NF11072_low_1
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 45067595 - 45068012
Alignment:
| Q |
1 |
acgattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45067595 |
acgattatcttttgtgatggctttccaactttgattccatacccatccaatccacttttaatcgcaatacaatcatcaccagagacaatgtagttgtctt |
45067694 |
T |
|
| Q |
101 |
caattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaaccttttattcaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
45067695 |
caattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttagcaatttagtccttgcaactgaaccttttattcaa |
45067794 |
T |
|
| Q |
201 |
tatcaatgacataaactccattaagttgaaaaataataattagaatttggacnnnnnnntctaaacgaatttctaaatgattgaatgtctaatggaccat |
300 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45067795 |
tatgaatgacataaactccattaagttgaaaaataataattagaatttggacaaaaaagtctaaactaatttctaaatgattgaatgtctaatggaccat |
45067894 |
T |
|
| Q |
301 |
gaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagttta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45067895 |
gaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatgttactgaagatataaagttta |
45067994 |
T |
|
| Q |
401 |
atcagaagaatgaaataa |
418 |
Q |
| |
|
||||| |||| |||||| |
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|
| T |
45067995 |
gtcagatgaataaaataa |
45068012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 305 - 516
Target Start/End: Original strand, 45082921 - 45083132
Alignment:
| Q |
305 |
acattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
404 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082921 |
acattacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
45083020 |
T |
|
| Q |
405 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggac |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||||| || |
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| T |
45083021 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtac |
45083120 |
T |
|
| Q |
505 |
aaaccaaaaagg |
516 |
Q |
| |
|
||||||| |||| |
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|
| T |
45083121 |
aaaccaagaagg |
45083132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45082681 - 45082797
Alignment:
| Q |
1 |
acgattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtctt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
45082681 |
acgattatattttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagaaacaatgtagttgtctt |
45082780 |
T |
|
| Q |
101 |
caattagaacgtttgta |
117 |
Q |
| |
|
|||| ||||| |||||| |
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|
| T |
45082781 |
caatcagaacatttgta |
45082797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 45078387 - 45078536
Alignment:
| Q |
3 |
gattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttca |
102 |
Q |
| |
|
|||||| | |||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
45078387 |
gattatttgttgtgatggcattccaactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccagagacaatgaagttgtcttca |
45078486 |
T |
|
| Q |
103 |
attagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaa |
152 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
45078487 |
attctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaaa |
45078536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 45075157 - 45075384
Alignment:
| Q |
3 |
gattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttca |
102 |
Q |
| |
|
|||||| | ||| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |
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|
| T |
45075157 |
gattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatatagttgtcttca |
45075256 |
T |
|
| Q |
103 |
attagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaaccttttattcaata |
202 |
Q |
| |
|
||| ||||||||||| || |||| |||| | |||||| ||||||||||||| |||| | |||||| ||||||||||||| ||| || |||| || |
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|
| T |
45075257 |
attctgacgtttgtacatgaatctggtaagta---aaaaaaatggaaaaacaagaagtggtcggtaatttactccttgcaattgagcctcttgttcagta |
45075353 |
T |
|
| Q |
203 |
tcaatgacataaactccattaagttgaaaaa |
233 |
Q |
| |
|
| || | ||||| |||||| ||||| |||| |
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|
| T |
45075354 |
tgaaggtcataagttccatttagttggaaaa |
45075384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 260 - 516
Target Start/End: Original strand, 45075451 - 45075702
Alignment:
| Q |
260 |
tctaaacgaatttctaaatgattgaatgtctaatggaccatgaatacatt-accagggtctatgccatctgtgtttggaacgtccactggtgccagaatt |
358 |
Q |
| |
|
||||||| |||||||||||||||| || || || ||||| |||||||| ||| |||||||||||||| ||||| |||| ||| |||||||| |||||| |
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|
| T |
45075451 |
tctaaactaatttctaaatgattgtatatcaaactgaccaaaaatacatttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaatt |
45075550 |
T |
|
| Q |
359 |
gtaagtccgtttataattatgttac-------tgaagatataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctttaaataaa |
451 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| | | || ||||| |||||| |
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|
| T |
45075551 |
gtaagtccatttataattatgttactgaagaatgaagatataaagtttagtcagatgaacgaaataatatatac--ttagaa-----------aaataag |
45075637 |
T |
|
| Q |
452 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaagg |
516 |
Q |
| |
|
||||| ||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
45075638 |
gttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaagg |
45075702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 452 - 511
Target Start/End: Original strand, 45068021 - 45068080
Alignment:
| Q |
452 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45068021 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa |
45068080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 410
Target Start/End: Original strand, 45078620 - 45078721
Alignment:
| Q |
309 |
taccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaag |
408 |
Q |
| |
|
|||| |||| ||| ||||||||||||||| ||| |||||||| ||||| |||||||| |||||||||||||||||| ||| || ||| || |||||||| |
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|
| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatcagaag |
45078719 |
T |
|
| Q |
409 |
aa |
410 |
Q |
| |
|
|| |
|
|
| T |
45078720 |
aa |
45078721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 510
Target Start/End: Original strand, 45078769 - 45078801
Alignment:
| Q |
478 |
atcaaacctgctgtaaattggatggacaaacca |
510 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
45078769 |
atcaaacctgctgtaaattggatgaacaaacca |
45078801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 34504944 - 34505095
Alignment:
| Q |
15 |
tgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaattagaacgttt |
114 |
Q |
| |
|
||||||||| || | ||| |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
34504944 |
tgatggctttccgaatttaattccatattgatcccatccactttttatcgcaatacaatcatcaccagagacaatgtagttgtcttcgatcctaacgttc |
34505043 |
T |
|
| Q |
115 |
gtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttag |
166 |
Q |
| |
|
||| | || ||||||||||||| |||||||| |||| |||| | ||||||| |
|
|
| T |
34505044 |
gtagatgaatctgttaagaaggcgaaaaatggaaaaatcaagcagtggttag |
34505095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 34505293 - 34505403
Alignment:
| Q |
307 |
attaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga |
406 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||| |||||||| ||||| ||||| || |||||||||||||||||||||| |||||| || |||| | |
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|
| T |
34505293 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa |
34505392 |
T |
|
| Q |
407 |
agaatgaaata |
417 |
Q |
| |
|
||||||||||| |
|
|
| T |
34505393 |
agaatgaaata |
34505403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 516
Target Start/End: Original strand, 34505450 - 34505504
Alignment:
| Q |
462 |
ttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaagg |
516 |
Q |
| |
|
|||||||||| | | |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
34505450 |
ttgaaaatggtgcattatcaaacctgctgtaagttggatggacaaaccaagaagg |
34505504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 29765336 - 29765255
Alignment:
| Q |
24 |
gccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatt |
105 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || | |||| ||| ||||| ||||| || |||||| |||||||||| |
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|
| T |
29765336 |
gccaaatttgatgccatactcatcccatccactcttcacagcaacacagtcatccccagaaactatgtagcagtcttcaatt |
29765255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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