View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11072_low_13 (Length: 246)

Name: NF11072_low_13
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11072_low_13
NF11072_low_13
[»] chr4 (12 HSPs)
chr4 (126-246)||(18987200-18987320)
chr4 (126-246)||(27520433-27520553)
chr4 (57-129)||(18986615-18986687)
chr4 (57-129)||(27520829-27520901)
chr4 (126-205)||(27471494-27471573)
chr4 (1-82)||(27482552-27482633)
chr4 (1-82)||(18986493-18986577)
chr4 (57-129)||(27482668-27482740)
chr4 (1-80)||(27520941-27521023)
chr4 (57-123)||(27462594-27462660)
chr4 (1-82)||(27462412-27462496)
chr4 (28-82)||(27462499-27462553)
[»] chr5 (11 HSPs)
chr5 (57-162)||(1758676-1758781)
chr5 (169-246)||(29250127-29250204)
chr5 (1-82)||(27919065-27919146)
chr5 (1-129)||(29168672-29168815)
chr5 (57-129)||(29425844-29425916)
chr5 (1-82)||(29425719-29425803)
chr5 (1-82)||(1758560-1758647)
chr5 (57-129)||(27919187-27919259)
chr5 (57-129)||(29567858-29567930)
chr5 (1-82)||(29567965-29568052)
chr5 (126-193)||(29567215-29567281)
[»] chr3 (2 HSPs)
chr3 (57-129)||(25519019-25519091)
chr3 (1-82)||(25518897-25518984)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 18987200 - 18987320
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 225  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  18987200 tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt 18987299  T
Q  226 gaagggtaaaaatgctaaatt 246  Q
    |||||||||||||||||||||    
T  18987300 gaagggtaaaaatgctaaatt 18987320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 27520553 - 27520433
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 225  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||     
T  27520553 tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc 27520454  T
Q  226 gaagggtaaaaatgctaaatt 246  Q
    |||||||||||||||||||||    
T  27520453 gaagggtaaaaatgctaaatt 27520433  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 18986615 - 18986687
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18986615 ctcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtctttt 18986687  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 27520901 - 27520829
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27520901 ctcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtctttt 27520829  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt 205  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27471494 tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt 27471573  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27482552 - 27482633
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  || |||||||||||||||||    
T  27482552 tgggatgaagttatggaagtcgaggaagaaaatgaaaaagaccaagaagaagagccctctcctgatgctgaagatgaaaaag 27482633  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18986493 - 18986577
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa---aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||  || |||||||||||||||||    
T  18986493 tgggatgaagttatggaagacgaggaagaaaatgaaaaggaacaacaagaagaagagccctctcctgatgctgaagatgaaaaag 18986577  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27482668 - 27482740
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| ||||    
T  27482668 ctcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgtttt 27482740  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 27521023 - 27520941
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaaga---acaagaagaagagccctcttttgttgctgaagatgaaaa 80  Q
    ||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||  || |||||||||||||||    
T  27521023 tgggatgaagttatggaagtcgaggaagaaaatgaaaaagaacaacaagaagaagagccctctcctgatgctgaagatgaaaa 27520941  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 27462594 - 27462660
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg 123  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  27462594 ctcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg 27462660  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27462412 - 27462496
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaac---aagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||| || ||||||||||||||||||||   |||||||||||||||||  || |||||||||| ||||||    
T  27462412 tgggatgaagttatggaagtcggggaagaaaatgaaaaagaacaagaagaagaagagccctctcctgatgctgaagataaaaaag 27462496  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 27462499 - 27462553
Alignment:
Q  28 gaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||| ||| |||||||||||||||| ||||||  || |||||||||||||||||    
T  27462499 gaaaaagaacaagaacaagaagaagaaccctctcctgatgctgaagatgaaaaag 27462553  T

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Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 1758676 - 1758781
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttttaatttacagaatct 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1758676 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttataatttacagaatct 1758775  T
Q  157 atgtaa 162  Q
    ||||||    
T  1758776 atgtaa 1758781  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 29250127 - 29250204
Alignment:
Q  169 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaatt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  29250127 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaatt 29250204  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27919065 - 27919146
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||| |||||||||||||    
T  27919065 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagagccctctcctgatgccgaagatgaaaaag 27919146  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29168672 - 29168815
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaa------gaagagccctcttttg---------ttgctgaagatgaaaaagtca 85  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||      ||||||| |||| |||         |||||||||||||||| ||||    
T  29168672 tgggatgaagtcatggaagacgaggaagaaaatgaaaaagaacaagaacaagatgaagagcactctcttgactctcttgttgctgaagatgaaaatgtca 29168771  T
Q  86 tatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||    
T  29168772 tatctcaggtatatgtcttgaatcttcgactgtgattgtctttt 29168815  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 29425844 - 29425916
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  29425844 ctcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtctttt 29425916  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29425719 - 29425803
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaa---caagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||  || |||||||||||||||||    
T  29425719 tgggatgaagttatggaaaacgaggaagaaaatgaaaaagaacaccaagaagaagagccctctcctgatgctgaagatgaaaaag 29425803  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1758560 - 1758647
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||  || |||||||||||||||||    
T  1758560 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaag 1758647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27919187 - 27919259
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  27919187 ctcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgactttt 27919259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 29567930 - 29567858
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||    
T  29567930 ctctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtctttt 29567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29568052 - 29567965
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||  || || ||||||||||||||    
T  29568052 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaag 29567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt 193  Q
    |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  29567281 tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt 29567215  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 25519019 - 25519091
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  25519019 ctcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtctttt 25519091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25518897 - 25518984
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||  || |||||||||||||||||    
T  25518897 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaag 25518984  T

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