View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11072_low_14 (Length: 218)
Name: NF11072_low_14
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 1758820 - 1759019
Alignment:
| Q |
1 |
aagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1758820 |
aagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatttttgtttttgtaggatgaattggaaaatgattatgaagaagc |
1758919 |
T |
|
| Q |
101 |
tgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758920 |
tgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
1759019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 29250415 - 29250592
Alignment:
| Q |
23 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
29250415 |
tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgat |
29250514 |
T |
|
| Q |
123 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||| |||||| |
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|
| T |
29250515 |
aagtgtttgagccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactac |
29250592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 38867046 - 38866902
Alignment:
| Q |
56 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
155 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
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|
| T |
38867046 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtccatgt |
38866947 |
T |
|
| Q |
156 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
38866946 |
ggcaagggatatgaggttctaatatgtgcaaacaattgttactac |
38866902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 29426336 - 29426480
Alignment:
| Q |
56 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
155 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |
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|
| T |
29426336 |
atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccatgt |
29426435 |
T |
|
| Q |
156 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426436 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
29426480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 29566696 - 29566547
Alignment:
| Q |
51 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
150 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| | || |
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|
| T |
29566696 |
aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttcaagtgtc |
29566597 |
T |
|
| Q |
151 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29566596 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
29566547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 29169362 - 29169511
Alignment:
| Q |
51 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
150 |
Q |
| |
|
|||| |||| || |||||||||||||||||| ||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||| | | |
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|
| T |
29169362 |
aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcaggtgcc |
29169461 |
T |
|
| Q |
151 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
29169462 |
catgtggcaagggatatgagattctaatatgtgcaaacaattgttactac |
29169511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 32432111 - 32432260
Alignment:
| Q |
51 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
150 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||| | | || |
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|
| T |
32432111 |
aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtc |
32432210 |
T |
|
| Q |
151 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32432211 |
catgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactac |
32432260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 27463021 - 27463197
Alignment:
| Q |
24 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgata |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27463021 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgata |
27463120 |
T |
|
| Q |
124 |
agtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27463121 |
agtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
27463197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 27483396 - 27483569
Alignment:
| Q |
27 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27483396 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27483495 |
T |
|
| Q |
127 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483496 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
27483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 27471623 - 27471796
Alignment:
| Q |
27 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27471623 |
agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27471722 |
T |
|
| Q |
127 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27471723 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
27471796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 27520004 - 27519827
Alignment:
| Q |
23 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520004 |
tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgat |
27519905 |
T |
|
| Q |
123 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27519904 |
aagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
27519827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 18987740 - 18987919
Alignment:
| Q |
21 |
agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18987740 |
agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattg |
18987839 |
T |
|
| Q |
121 |
ataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18987840 |
ataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
18987919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 25520054 - 25520198
Alignment:
| Q |
56 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
155 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25520054 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
25520153 |
T |
|
| Q |
156 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25520154 |
agcaagggatatgaggttctaatctgtgcaaacaattgttactac |
25520198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 1700074 - 1699965
Alignment:
| Q |
87 |
gattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaa |
186 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| ||| || || |||||||||||||||| | ||||||||||||||| ||||||||||| || | || | |
|
|
| T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca |
1699975 |
T |
|
| Q |
187 |
acaattgtta |
196 |
Q |
| |
|
|||||||||| |
|
|
| T |
1699974 |
acaattgtta |
1699965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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