View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11072_low_6 (Length: 341)

Name: NF11072_low_6
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11072_low_6
NF11072_low_6
[»] chr2 (4 HSPs)
chr2 (1-335)||(37494802-37495136)
chr2 (244-317)||(29929943-29930017)
chr2 (139-192)||(39725913-39725966)
chr2 (144-220)||(42606136-42606211)
[»] chr5 (4 HSPs)
chr5 (145-210)||(3290036-3290101)
chr5 (139-184)||(33467374-33467419)
chr5 (140-186)||(20272420-20272465)
chr5 (237-269)||(1708000-1708032)
[»] chr1 (2 HSPs)
chr1 (145-186)||(11185331-11185372)
chr1 (140-186)||(11193384-11193429)
[»] chr4 (1 HSPs)
chr4 (142-222)||(910568-910647)
[»] chr8 (1 HSPs)
chr8 (242-316)||(11497523-11497597)
[»] chr6 (1 HSPs)
chr6 (247-290)||(20870934-20870977)
[»] chr7 (2 HSPs)
chr7 (142-180)||(2392101-2392139)
chr7 (248-289)||(7512547-7512588)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 37495136 - 37494802
Alignment:
Q  1 aaaatagttctagatttgtagacacttctaatgacttcagcctatgattatccatgcatgttaacttaaataggcatattagtcttgaaagttgtataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37495136 aaaatagttctagatttgtagacacttctaatgacttcagcctatgattatccatgcatgtcaacttaaataggcatattagtcttgaaagttgtataca 37495037  T
Q  101 ttttttataataaaattgtctccattccatttgagcacatgaaaatcatgtatatttgaacacaatttaaatgattaatggatatcttatataattgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37495036 ttttttataataaaattgtctccattccatttgagcacatgaaaatcatgtatatttgaacacaatttaaatgattaatggatatcttatatatttgaaa 37494937  T
Q  201 acctgaaaattgtggttaatgatgttcaaatatacatgaaaacctgaaaatcgtggttaatgatgttcaaagtcgtggctaattatgtttgtagatggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37494936 acctgaaaattgtggttaatgatgttcaaatatacatgaaaacctgaaaatcgtggttaatgatgttcaaagtcgtggctaattatgtttgtagatggtt 37494837  T
Q  301 aatgagttgtgacacctcgacatgcatgttcgtta 335  Q
    |||||||||||||||||||||||||||||||||||    
T  37494836 aatgagttgtgacacctcgacatgcatgttcgtta 37494802  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 29929943 - 29930017
Alignment:
Q  244 ctgaaaatcgtggttaatgatgttcaaagtcgtggctaattatgtt-tgtagatggttaatgagttgtgacacct 317  Q
    |||||||| |||||||||||||||||| ||||||| |||||| |||  || |||||||||||| || ||||||||    
T  29929943 ctgaaaattgtggttaatgatgttcaatgtcgtggttaattacgttcagtggatggttaatgaattttgacacct 29930017  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 39725913 - 39725966
Alignment:
Q  139 atgaaaatcatgtatatttgaacacaatttaaatgattaatggatatcttatat 192  Q
    ||||||||||||||||||| |||||||||||  ||||||||  |||| ||||||    
T  39725913 atgaaaatcatgtatatttaaacacaatttaggtgattaataaatatattatat 39725966  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 42606136 - 42606211
Alignment:
Q  144 aatcatgtatatttgaacacaatttaaatgattaatggatatcttatataattgaaaacctgaaaattgtggttaat 220  Q
    ||||||||||||||| |||||||||  |||  ||||||||||  | || ||||||| ||||||||| ||||||||||    
T  42606136 aatcatgtatatttggacacaatttggatgggtaatggatatgctgtacaattgaacacctgaaaa-tgtggttaat 42606211  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 3290036 - 3290101
Alignment:
Q  145 atcatgtatatttgaacacaatttaaatgattaatggatatcttatataattgaaaacctgaaaat 210  Q
    |||||||||||||||||||||||| |||||||||| |||||| | |||| ||||| || |||||||    
T  3290036 atcatgtatatttgaacacaatttgaatgattaattgatatcatctatatttgaacacttgaaaat 3290101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 33467374 - 33467419
Alignment:
Q  139 atgaaaatcatgtatatttgaacacaatttaaatgattaatggata 184  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||    
T  33467374 atgaaaatcatgtatatttgaacacaatttggaggattaatggata 33467419  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 20272465 - 20272420
Alignment:
Q  140 tgaaaatcatgtatatttgaacacaatttaaatgattaatggatatc 186  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||    
T  20272465 tgaaaatcat-tatatttgaacaaaatttgaatgattaatggatatc 20272420  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 1708032 - 1708000
Alignment:
Q  237 tgaaaacctgaaaatcgtggttaatgatgttca 269  Q
    |||| ||||||||||||||||||||||||||||    
T  1708032 tgaacacctgaaaatcgtggttaatgatgttca 1708000  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 11185372 - 11185331
Alignment:
Q  145 atcatgtatatttgaacacaatttaaatgattaatggatatc 186  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  11185372 atcatgtatatttgaacacaatttggatgattaatggatatc 11185331  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 11193429 - 11193384
Alignment:
Q  140 tgaaaatcatgtatatttgaacacaatttaaatgattaatggatatc 186  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||    
T  11193429 tgaaaatcat-tatatttgaacaaaatttgaatgattaatggatatc 11193384  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 910568 - 910647
Alignment:
Q  142 aaaatcatgtatatttgaacacaatttaaatgattaatggatatcttatataattgaaaacctgaaaattgtggttaatga 222  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||| || | || | |||||  ||||||||||| |||||||    
T  910568 aaaatcatgtatatttgaacataatttagatgattaatagatatattgt-tattcgaaaaattgaaaattgtgattaatga 910647  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 11497597 - 11497523
Alignment:
Q  242 acctgaaaatcgtggttaatgatgttcaaagtcgtggctaattatgtt-tgtagatggttaatgagttgtgacacc 316  Q
    |||||||||||||||||||||||||||||| || ||| ||| | |||| ||| ||||| |||||||||||| ||||    
T  11497597 acctgaaaatcgtggttaatgatgttcaaaatcatggttaactgtgttctgttgatgg-taatgagttgtggcacc 11497523  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 20870977 - 20870934
Alignment:
Q  247 aaaatcgtggttaatgatgttcaaagtcgtggctaattatgttt 290  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||    
T  20870977 aaaatcatggttaatgatgttcaaagtcgtggttaatcatgttt 20870934  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 2392101 - 2392139
Alignment:
Q  142 aaaatcatgtatatttgaacacaatttaaatgattaatg 180  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  2392101 aaaatcatgtatttttgaacataatttaaatgattaatg 2392139  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 7512588 - 7512547
Alignment:
Q  248 aaatcgtggttaatgatgttcaaagtcgtggctaattatgtt 289  Q
    |||||||||||||||||||||||| |||||| ||||| ||||    
T  7512588 aaatcgtggttaatgatgttcaaaatcgtggttaattgtgtt 7512547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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