View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_low_8 (Length: 335)
Name: NF11072_low_8
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 9335399 - 9335716
Alignment:
| Q |
18 |
gggcaatgaaagaaataaagactaattgaattcaaaagtttcaaaacctcgtaaatatgcaatatgcaacatttttgtgtgctctagcataaacggggct |
117 |
Q |
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| T |
9335399 |
gggcaatgaaagaaaaaaagactaattgaattcaaaagtttcataacctcgtaaatatgcaatatgcaacatttttgtgtgttctagcataaacggggct |
9335498 |
T |
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| Q |
118 |
ctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatga |
217 |
Q |
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| T |
9335499 |
ctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatga |
9335598 |
T |
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| Q |
218 |
accatatgatttaaatatgcaaatgatccagtcagtagcggtcactagaggccaatatgaaatacaatgtacgggtttttgcaaaaacctgccacaaggg |
317 |
Q |
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| T |
9335599 |
accatatgatttaaatatgcaaatgatccattcagtagcggtcaccagaggccaatatgaaatacaatgtacaggtttttgcaaaaacctgctacaaggg |
9335698 |
T |
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| Q |
318 |
ccagtaactcaattcagt |
335 |
Q |
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| T |
9335699 |
ccagtaactcaattcagt |
9335716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 9942098 - 9942176
Alignment:
| Q |
138 |
gttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatg |
216 |
Q |
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| T |
9942098 |
gttctacaaactcaattcctaaacttgcatcagtttacaacctctagattttgagcaaaattacagaataaagcaaatg |
9942176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 42364073 - 42364143
Alignment:
| Q |
151 |
aattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaacca |
221 |
Q |
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| T |
42364073 |
aattcctaaactcgcatcagtttaaacactctagattttgaacaaaattacaaaataaatcaaatgcacca |
42364143 |
T |
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