View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11072_low_9 (Length: 326)
Name: NF11072_low_9
Description: NF11072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11072_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 25636103 - 25635804
Alignment:
| Q |
19 |
gaattggacatcgtgattccaacgatacgaaacctcgatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtg |
118 |
Q |
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| T |
25636103 |
gaattggacatcgtgattccaacgatacgaaacctcgatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtg |
25636004 |
T |
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| Q |
119 |
atccttcaaaagtcatcaaagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25636003 |
atccttcaaaagtcatcaaagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttc |
25635904 |
T |
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| Q |
219 |
attcaaagactctgcttgtcgttgctttggtttcattgtatcaaagaagaagtatatctttactattgatgatgattgctttgtaagttttcttcatctc |
318 |
Q |
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| T |
25635903 |
attcaaagactctgcttgtcgttgctttggtttcattgtttcaaagaagaagtatatctttactattgatgatgattgctttgtatgtcttcttcatctc |
25635804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 37 - 309
Target Start/End: Complemental strand, 5020152 - 5019880
Alignment:
| Q |
37 |
ccaacgatacgaaacctcgatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatccttcaaaagtcatca |
136 |
Q |
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| T |
5020152 |
ccaacaataagaaaccttgatttcttagagatgtggaggccattctttgagccttatcatctcatcattgttcaagatggtgacccttcaaaaaccatca |
5020053 |
T |
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| Q |
137 |
aagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaaagactctgcttg |
236 |
Q |
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| T |
5020052 |
atgttcctcaaggttttgattatgagctttataaccgtaatgatattaacaggattcttggtccaaaagctagctgtatctcattcaaggattctgcatg |
5019953 |
T |
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| Q |
237 |
tcgttgctttggtttcattgtatcaaagaagaagtatatctttactattgatgatgattgctttgtaagtttt |
309 |
Q |
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| T |
5019952 |
tcgttgctttggttatatggtttctaagaagaagtatatctataccattgatgatgattgctttgtgagtttt |
5019880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 5581847 - 5581563
Alignment:
| Q |
25 |
gacatcgtgattccaacgatacgaaacctcgatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatcctt |
124 |
Q |
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||||| ||||||||||| ||| | ||||| |||||||||||| |||||| | || ||| ||||||||||| | |||||||||||||||||||| |||| |
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| T |
5581847 |
gacattgtgattccaactataaggaaccttgatttcttggaaatgtggaggccatattttgaaccttatcatttgatcattgttcaagatggtgaccctt |
5581748 |
T |
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| Q |
125 |
caaaagtcatcaaagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaa |
224 |
Q |
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| T |
5581747 |
caaaaactattaaggttccacctggttttgattatgaactttataataggaatgatattaataagcttcttggtcctagggcttcttgcatttcattcaa |
5581648 |
T |
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| Q |
225 |
agactctgcttgtcgttgctttggtttcattgtatcaaagaagaagtatatctttactattgatgatgattgctttgtaagtttt |
309 |
Q |
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|||||||| |||||||||||||||| ||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
5581647 |
ggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaagtttt |
5581563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 309
Target Start/End: Original strand, 20176923 - 20177141
Alignment:
| Q |
91 |
tatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaa |
190 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| || || || || ||||| || ||||| ||||| || | | |
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| T |
20176923 |
tatcatctcatcattgttcaagatggtgacccttcaaaagtcatcaaagttcctcaaggtttcgattacgagctttacaatcgtaatgatatcaatagga |
20177022 |
T |
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| Q |
191 |
ttttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcattgtatcaaagaagaagtatatctttactattgatga |
290 |
Q |
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| T |
20177023 |
tcttgggtcctaaagcttcttgtatctcctttaaggattctgcttgtcgttgctttggttatatggtttctaagaagaagtatatttataccattgatga |
20177122 |
T |
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| Q |
291 |
tgattgctttgtaagtttt |
309 |
Q |
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||||||||||||||||||| |
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| T |
20177123 |
tgattgctttgtaagtttt |
20177141 |
T |
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