View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_high_1 (Length: 1070)

Name: NF11073_high_1
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_high_1
NF11073_high_1
[»] chr5 (10 HSPs)
chr5 (371-950)||(41703717-41704314)
chr5 (87-331)||(41704313-41704543)
chr5 (742-1052)||(41467192-41467493)
chr5 (978-1052)||(41703648-41703722)
chr5 (20-86)||(41704567-41704634)
chr5 (945-1032)||(41506883-41506970)
chr5 (978-1040)||(41513161-41513223)
chr5 (931-1017)||(41497620-41497706)
chr5 (978-1040)||(41522096-41522158)
chr5 (931-1005)||(33077964-33078038)
[»] chr3 (1 HSPs)
chr3 (742-882)||(36467105-36467243)
[»] chr6 (1 HSPs)
chr6 (562-610)||(33826623-33826671)
[»] chr8 (1 HSPs)
chr8 (562-605)||(10908947-10908990)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 371 - 950
Target Start/End: Complemental strand, 41704314 - 41703717
Alignment:
Q  371 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704314 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 41704215  T
Q  471 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||    
T  41704214 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaatt 41704116  T
Q  571 -ttaacaaactctaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 669  Q
      |||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704115 agtaactacttttaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 41704016  T
Q  670 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgtta---------------------tgtattatagtt 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||| ||    
T  41704015 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactt 41703916  T
Q  749 tcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg-- 846  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||       ||||||||      
T  41703915 tcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggat 41703823  T
Q  847 --ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcga 944  Q
      |||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  41703822 atataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcga 41703723  T

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Target: chr5; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 41704543 - 41704313
Alignment:
Q  87 caaaaaatcatacatactaaagtacatattactccatgcacaaagacaaagaacattattattggctcctctnnnnnnnnnnnnnnntcattattgtctg 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |  |  |||||    
T  41704543 caaaaaatcaaacatactaaagtacatattactccatgcacaaagacaaagaacattattattggctcctctaaa--------------aaaaaagtctg 41704458  T
Q  187 gttatgctgtctatcgacaattattttacatgtttacgtatttatatgatactgcaagaaattgtggtttcattgatggtgttcatcaatgaaagataga 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704457 gttatgctgtctatcgacaattattttacatgtttacttatttatatgatactgcaagaaattgtggtttcattgatggtgttcatcaatgaaagataga 41704358  T
Q  287 acaatggatagtgttgtcactggtcaaagggaccgtaaggccgct 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41704357 acaatggatagtgttgtcactggtcaaagggaccgtaaggccgct 41704313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 742 - 1052
Target Start/End: Original strand, 41467192 - 41467493
Alignment:
Q  742 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac 841  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| | || |||    
T  41467192 tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac 41467291  T
Q  842 cttggataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcat 941  Q
    ||| |||||||||||   ||||||||||||||| |||||||              || |||||| ||| |||||||||| ||||       ||||| |||    
T  41467292 cttagataatagttc---aatcctgcactgtctacctacatctttttcttttttgcatcagaccttattgtaagattatcgaga------catgaaccat 41467382  T
Q  942 cgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccag 1041  Q
    || | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| |||||| |||| |||    
T  41467383 cggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcag 41467482  T
Q  1042 tgccactgatg 1052  Q
     ||| ||||||    
T  41467483 ggcccctgatg 41467493  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 978 - 1052
Target Start/End: Complemental strand, 41703722 - 41703648
Alignment:
Q  978 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatg 1052  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatg 41703648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 41704634 - 41704567
Alignment:
Q  20 agtatttcacccatattcaagcttaaccaaa-tattgatccctacttaatcaattcttttacctgatt 86  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41704634 agtatttcacccatattcaagcttaacgaaaatattgatccctacttaatcaattcttttacctgatt 41704567  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 945 - 1032
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  945 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 1032  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 978 - 1040
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  978 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 1040  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 931 - 1017
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  931 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 1017  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 978 - 1040
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  978 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 1040  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 931 - 1005
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  931 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 1005  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

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Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 742 - 882
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
Q  742 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta 840  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| ||    
T  36467105 tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta 36467204  T
Q  841 ccttggataatagttcaataatcctgcactgtctgcctacat 882  Q
    |||| |||| ||||||   |||||||||||| ||||||||||    
T  36467205 ccttagatattagttc---aatcctgcactgcctgcctacat 36467243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 562 - 610
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
Q  562 taactacttttaacaaactctaacaatatctaatgattctctaattata 610  Q
    ||||||||||||||||||||||||||||||||   |||| |||||||||    
T  33826671 taactacttttaacaaactctaacaatatctatcaattcactaattata 33826623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 605
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
Q  562 taactacttttaacaaactctaacaatatctaatgattctctaa 605  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  10908990 taactacatttaacaaactctaacaatatctaataaatctctaa 10908947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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