View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_10 (Length: 488)

Name: NF11073_low_10
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_10
NF11073_low_10
[»] chr1 (2 HSPs)
chr1 (12-483)||(14288232-14288703)
chr1 (341-437)||(28927836-28927932)
[»] chr7 (1 HSPs)
chr7 (341-438)||(32414257-32414354)
[»] chr3 (5 HSPs)
chr3 (128-297)||(7058316-7058485)
chr3 (345-438)||(4150209-4150302)
chr3 (345-438)||(4165978-4166071)
chr3 (341-438)||(13485325-13485422)
chr3 (186-290)||(777706-777810)
[»] chr2 (1 HSPs)
chr2 (176-296)||(43874727-43874847)
[»] scaffold0210 (1 HSPs)
scaffold0210 (349-427)||(15739-15817)
[»] chr6 (3 HSPs)
chr6 (176-285)||(8656167-8656276)
chr6 (180-233)||(34800036-34800089)
chr6 (176-228)||(7140309-7140361)
[»] chr4 (1 HSPs)
chr4 (112-201)||(52187232-52187321)
[»] chr5 (1 HSPs)
chr5 (209-273)||(28091568-28091632)
[»] chr8 (3 HSPs)
chr8 (176-232)||(23273069-23273125)
chr8 (176-232)||(23411140-23411196)
chr8 (185-249)||(27701449-27701513)


Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 14288703 - 14288232
Alignment:
Q  12 atgttcaacatttaccacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaattgtgatgatgtcactttattccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14288703 atgttcaacatttaccacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaatcgtgatgatatcactttattccc 14288604  T
Q  112 aaattctctaaatatgccagcattaaccaaattatctctacagaactttgtcttttgtgtcggagatgatggccgtgttgagcccttttcatcatgtaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14288603 aaattctctaaatatgccagcattaaccaaattatctctacggaactttgtcttttgtgtcggagatgatggccgtgttgagcctttttcatcatgtaac 14288504  T
Q  212 aagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacacttgttaatttaaagattatttcatggt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14288503 aagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacacttgttaatttaaagattatttcatggt 14288404  T
Q  312 ataatcctcctgaggcctctttcaaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14288403 ataatcctcctgaggcctctttcaaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaa 14288304  T
Q  412 aagcaatctctcttctatcaaacatgttgattttggtgtggggttgaattccgcggattctcctttgcttct 483  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14288303 aatcaatctctcttctatcaaacatgtggattttggtgtggggttgaattccgcggattctcctttggttct 14288232  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 28927932 - 28927836
Alignment:
Q  341 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatg 437  Q
    ||||||||||| |||| ||| |||| |||| | ||| | | ||| |||||||  |||||| |||||||||| |||||||||||||||||||| ||||    
T  28927932 gagctatccacaccaaatctttgtacctttgaatttggagttacacctcttccgaaactctgtgggagtaagagcaatctctcttctatcaagcatg 28927836  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 32414257 - 32414354
Alignment:
Q  341 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 438  Q
    ||||||||  |||||||||| |||| |||| |||||||||||| |||| |||| ||||||   ||||| || ||||||||||||||||||||||||||    
T  32414257 gagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgt 32414354  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 297
Target Start/End: Complemental strand, 7058485 - 7058316
Alignment:
Q  128 ccagcattaaccaaattatctctacagaactttgtcttttgtgtcggagatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttga 227  Q
    ||||||||||||||  | ||||||||   |||| ||||||||||||| |||||||| ||||   | ||||||||  |||  ||||||||||||| |||||    
T  7058485 ccagcattaaccaacctgtctctacaaggctttctcttttgtgtcggcgatgatggtcgtgccaatcccttttcgacattaaacaagttgaatagtttga 7058386  T
Q  228 tcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacacttgttaatttaaa 297  Q
    ||||| | | ||||  ||||   |||||||||||||||| |||||| ||| |||||||||  ||||||||    
T  7058385 tcattaacagatgtgcagttcgtgataaacaaaacctctacatatcgagtgccacacttgccaatttaaa 7058316  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 438
Target Start/End: Original strand, 4150209 - 4150302
Alignment:
Q  345 tatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 438  Q
    |||| |||||||||||| ||| |||| |||||| ||||| |||| |||| |||||| ||||||  || | ||||||||||||||||||||||||    
T  4150209 tatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgt 4150302  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 438
Target Start/End: Original strand, 4165978 - 4166071
Alignment:
Q  345 tatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 438  Q
    |||| |||||||||||| ||| |||| |||||| ||||| |||| |||| |||||| ||||||  || | ||||||||||||||||||||||||    
T  4165978 tatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgt 4166071  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 13485422 - 13485325
Alignment:
Q  341 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 438  Q
    |||||||| |||||||||||||| | |||| |||||   |||| |||| |||| ||||||| |||||  || ||||||||||||||||||||||||||    
T  13485422 gagctatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaagagcaatctctcttctatcaaacatgt 13485325  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 777810 - 777706
Alignment:
Q  186 gtgttgagcccttttcatcatgtaacaagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacact 285  Q
    |||| ||||| |||||| ||| ||| | |||||||| ||||||||||||    |||  |||| |||||  ||||||||| |||||||| ||||||| |||    
T  777810 gtgtcgagccattttcaacatttaaaatgttgaatagtttgatcattgattgttgtatagttatggatgcacaaaacctttgcatatcaagtaccaaact 777711  T
Q  286 tgtta 290  Q
    |||||    
T  777710 tgtta 777706  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 43874847 - 43874727
Alignment:
Q  176 gatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatcta 275  Q
    ||||||||| |||| |||||||||||| ||| ||||| |||||||  |||||||||||| |  |||  ||||  ||||  ||||||||| |||||||| |    
T  43874847 gatgatggctgtgtcgagcccttttcaacatttaacatgttgaatcgtttgatcattgacagttgtttagttcaggatgcacaaaacctttgcatatcaa 43874748  T
Q  276 gtaccacacttgttaatttaa 296  Q
    ||||||  ||||| |||||||    
T  43874747 gtaccaagcttgtcaatttaa 43874727  T

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Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 15817 - 15739
Alignment:
Q  349 cactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttct 427  Q
    |||||||||||| | || |||| |||||| ||||| |||||||||||||||  |||| || ||| ||||||||||||||    
T  15817 cactccaagtctttatagctttgattttacgggtattcctcttcaaaaactatgtggaagcaaatgcaatctctcttct 15739  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 8656276 - 8656167
Alignment:
Q  176 gatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatcta 275  Q
    |||||||||||||||||||| |||||| ||| ||| | |||||||| ||||||  || |||| ||||    | | || |||||||||||||||||||| |    
T  8656276 gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtcgctctcttgacaaacaaaacctctgcatatcaa 8656177  T
Q  276 gtaccacact 285  Q
    || |||||||    
T  8656176 gtgccacact 8656167  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 34800089 - 34800036
Alignment:
Q  180 atggccgtgttgagcccttttcatcatgtaacaagttgaatactttgatcattg 233  Q
    ||||| ||||||||||||||||| ||||||||| ||||| ||||||| ||||||    
T  34800089 atggctgtgttgagcccttttcaacatgtaacatgttgagtactttggtcattg 34800036  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 7140361 - 7140309
Alignment:
Q  176 gatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttgat 228  Q
    |||||||||||||||||||| |||||| ||| ||| | |||||||| ||||||    
T  7140361 gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgat 7140309  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 52187232 - 52187321
Alignment:
Q  112 aaattctctaaatatgccagcattaaccaaattatctctacagaactttgtcttttgtgtcggagatgatggccgtgttgagcccttttc 201  Q
    ||||||||| ||| |||||||||||||||| || |||||| || |||||| |||||||   || ||||||||  |||| |||||||||||    
T  52187232 aaattctctgaatttgccagcattaaccaacttgtctctaaagtactttggcttttgtcgaggtgatgatggttgtgtcgagcccttttc 52187321  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 28091568 - 28091632
Alignment:
Q  209 aacaagttgaatactttgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatc 273  Q
    ||||||||||| |||||| ||||||| |||||| |||||| ||||  |||||||||||| |||||    
T  28091568 aacaagttgaacactttggtcattgataaatgtgaagttgaggattcacaaaacctctggatatc 28091632  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 23273125 - 23273069
Alignment:
Q  176 gatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttgatcatt 232  Q
    ||||||||||||| ||||||||||||| | ||||||| |||| |||| ||| |||||    
T  23273125 gatgatggccgtgctgagcccttttcagcttgtaacatgttggatacattggtcatt 23273069  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 23411140 - 23411196
Alignment:
Q  176 gatgatggccgtgttgagcccttttcatcatgtaacaagttgaatactttgatcatt 232  Q
    ||||||||||||| ||||||||||||| | ||||||| |||| |||| ||| |||||    
T  23411140 gatgatggccgtgctgagcccttttcagcctgtaacatgttggatacattggtcatt 23411196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 27701513 - 27701449
Alignment:
Q  185 cgtgttgagcccttttcatcatgtaacaagttgaatactttgatcattgaaaaatgtcaagttgt 249  Q
    ||||||||||||||||||  || ||| | |||||||||||||||| |||| || |||||| ||||    
T  27701513 cgtgttgagcccttttcaagatttaaaaggttgaatactttgatccttgagaattgtcaaattgt 27701449  T

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