View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_11 (Length: 468)
Name: NF11073_low_11
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 39471379 - 39470929
Alignment:
| Q |
1 |
ccacacatattattgaataataaataattccaacaagataataacaacaatctagttttacannnnnnnnnnnnnnnn-cagatagtttttacatattct |
99 |
Q |
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| T |
39471379 |
ccacacatattattgaataataaataattccaacaagataataacaacaatccagttttacatttttttttccttttttcagatagtttttacatattct |
39471280 |
T |
|
| Q |
100 |
tgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataaagacaaacatttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471279 |
tgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataaagacaaacatttc |
39471180 |
T |
|
| Q |
200 |
aatctcatgccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaagatttcttttattatgatactaaatctctacacgaatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39471179 |
aatctcatgccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaaggtttcttttattatgatactaaatctctacacgaatt |
39471080 |
T |
|
| Q |
300 |
catctattcctgttcctaaagaaaggnnnnnnnnnncaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgc |
399 |
Q |
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| T |
39471079 |
catctattcctgttcctaaagaaaggaaaaaaaaaacaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgc |
39470980 |
T |
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| Q |
400 |
tccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggt |
450 |
Q |
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| T |
39470979 |
tccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggt |
39470929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 450
Target Start/End: Complemental strand, 39464816 - 39464706
Alignment:
| Q |
340 |
tatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagacagtggaagtggtgtttatcccttttc |
439 |
Q |
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||||||||| ||||||||||| ||||| |||||| || ||||||||| ||||| |||||| ||| ||||||| || ||||| |||||||||||||||| |
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| T |
39464816 |
tatatcaaacaacaattcagaaaaacatcaactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttc |
39464717 |
T |
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| Q |
440 |
ccgctgtaggt |
450 |
Q |
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||||||||||| |
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| T |
39464716 |
ccgctgtaggt |
39464706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 442
Target Start/End: Original strand, 39460139 - 39460239
Alignment:
| Q |
339 |
gtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagacagtggaagtggtgtttatccctttt |
438 |
Q |
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|||||||||||||||||||| | ||||||||||| ||| ||||||| |||| || |||||||||| ||||||| || ||||| ||||||||||||||| |
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| T |
39460139 |
gtatatcaaagaacaattcaaa-aaacagtaacttaca--gagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatccctttt |
39460235 |
T |
|
| Q |
439 |
cccg |
442 |
Q |
| |
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|||| |
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|
| T |
39460236 |
cccg |
39460239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 39464898 - 39464853
Alignment:
| Q |
237 |
gcaaagccatgacatcactcacaaagatttcttttattatgatact |
282 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39464898 |
gcaaagccatgacatcactcacaaagattcctcttattatgatact |
39464853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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