View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_12 (Length: 458)
Name: NF11073_low_12
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51495194 - 51494983
Alignment:
| Q |
1 |
taaaataaaacggtgaaagtgaaccctaaacctaactattgggtttcttcagctaaaaaatacgagatttgattcgacacgcttaatagttttttcggga |
100 |
Q |
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| T |
51495194 |
taaaataaaacggtgaaagtgaaccctaaacctaactattggttttcttcagctaaaaaatacgagatttgattcgacacgcttaatagttttttc-gga |
51495096 |
T |
|
| Q |
101 |
aaataaataaataaacaattaatttagaggaaaagagagggagagttttcaaatccactaccaagattgtacttcaggaatcaatcaatcaataaaatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
51495095 |
aaataaataaataaacaattaatttagaggaaaagagagggagagttttcaaatccattgccaagattgtacttcaggaatcaatc--------aaatgc |
51495004 |
T |
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| Q |
201 |
catctctaatctaatctaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
51495003 |
catctctaatctaatctaaat |
51494983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 263 - 441
Target Start/End: Complemental strand, 51494937 - 51494759
Alignment:
| Q |
263 |
ccaaagtttagttactagtagtggtaactggatatatttttccttctttttgacaaaagtagtaattgaatgttttattgctacaagtcaggcaagcaca |
362 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51494937 |
ccaaagtttagttactagcagtggtaactggatatatttttccttctttttgacaaacgtagtaattgaatgttttattgctacaagtcaagcaagcaca |
51494838 |
T |
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| Q |
363 |
ttctcatcggtcacgggttaagtacattttcacaactcgagtcnnnnnnncatatggatcacagctcacactcataggt |
441 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51494837 |
ttctcatcagtcacgggtcaagtacattttcacaactcgagtctttttttcatatggatcacagctcacactcataggt |
51494759 |
T |
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