View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_14 (Length: 448)
Name: NF11073_low_14
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Complemental strand, 1527810 - 1527370
Alignment:
| Q |
5 |
caatgagatggacatcattcataaacttagcattttgaagatccaaatattgaataaattgacacttagacaataagttaaagattccaacataagtata |
104 |
Q |
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|||||| ||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1527810 |
caatgacatgcaaatcattcataaacttggaattttgaagatccaaatattgaataaattgacactttgacaataagttaaagattccaacataagtat- |
1527712 |
T |
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| Q |
105 |
gccaaagcatccttggaggaagagtttcctaataggaagacctttctctgcaacagatgaaagcaattcatctgggataaacaaatatgataaatcaaga |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1527711 |
--caaagcatccttggaggaagagtttcctaatcggaagacctttctctgcaacagatgaaagcaattcatctgggataaacgaatatgataaatcaaga |
1527614 |
T |
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| Q |
205 |
caagttaagcccatcaaactcaccaacgactcgataaagatgttgagatttccaaacgtcattctagttatggagatagacctcaaaccgggtctctcac |
304 |
Q |
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|||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1527613 |
caagttaagcccatcaaattcaccaacgactgaataaaaatgttgagatttccaaacgtcattctagttatggagatagacctcaaaccgggtctctcac |
1527514 |
T |
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| Q |
305 |
gaagagcagaagcaatgtcattgtcggttaaatagtaagtgttcaacatcacaatctcttgaagaaacacacaatttttacacaagtgcaaaagcaacga |
404 |
Q |
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| T |
1527513 |
gaatagcagaagcaatgtcattgtcggttaaattgtaagtgttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacga |
1527414 |
T |
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| Q |
405 |
gccatttgcatagggatgaccagagagattaaccctgcggagct |
448 |
Q |
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| T |
1527413 |
gtcatttgcatagtgatgaccagagagattaaccttgtggagct |
1527370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 12118904 - 12118474
Alignment:
| Q |
18 |
atcattcataaacttagcattttgaagatccaaatattgaataaattgacacttagacaataagttaaagattccaacataagtatagccaaagcatcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
12118904 |
atcattcataaacttagcattttgaagatccaaatattgaataaattgacactttgacaataagttaaagattccaaaataagtatagccaaagtatccc |
12118805 |
T |
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| Q |
118 |
tggaggaagagtttcctaataggaagacctttctctgcaacagatgaaagcaattcatctgggataaacaaatatgataaatcaagacaagttaagccca |
217 |
Q |
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| T |
12118804 |
tggaggaagagtttcctaataggaagagctttctctgcaacatatgaaagcaattcatctgggataaacgaatatgataaatcaagagaagttaagcccg |
12118705 |
T |
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| Q |
218 |
tcaaactcaccaacgactcgataaagatgttgagatttccaaacgtcattctagttatggagatagacctcaaaccgggtctctcacgaagagcagaagc |
317 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||| |
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| T |
12118704 |
tcaaattcaccaacgactcaataaagatgttgagatttccaaacgtcattctagttatggagatagacctcaatccaggtctctcacaaatagcagaagt |
12118605 |
T |
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| Q |
318 |
aatgtcattgtcggttaaatagtaagtgttcaacatcacaatctcttgaagaaacacacaatttttacacaagtgcaaaagcaacgagccatttgcatag |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12118604 |
aatttcattgtcggttaaatagtaagtgttcaacatcacaatctcttgaagaaacacacaatttttatacaagtgcaaaagcaacgagccatttgcatag |
12118505 |
T |
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| Q |
418 |
ggatgaccagagagattaaccctgcggagct |
448 |
Q |
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| T |
12118504 |
tgatgatcagagagattaaccctacggagct |
12118474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 6006833 - 6007074
Alignment:
| Q |
18 |
atcattcataaacttagcattttgaagatccaaatattgaataaattgacacttagacaataagttaaagattccaacataagtatagccaaagcatcct |
117 |
Q |
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|||||||| ||| | |||| ||||||||||||||||||||| | | ||||| |||||||| |||||| ||| ||||||||| | |||| ||| ||| ||| |
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| T |
6006833 |
atcattcagaaaatcagcactttgaagatccaaatattgaaaataatgacaattagacaacaagttatagagtccaacataggaatagtcaaggcaacct |
6006932 |
T |
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| Q |
118 |
tggaggaagagtttcctaataggaagacctttctctgcaacagatgaaagcaattcatctgggataaacaaatatgataaatcaagacaagttaagccca |
217 |
Q |
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| T |
6006933 |
tgaagcacaagcttccttaaaggaaaacctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaagacaagttaagcctt |
6007032 |
T |
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| Q |
218 |
tcaaactcaccaacgactcgataaagatgttgagatttccaa |
259 |
Q |
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| T |
6007033 |
tcaatttcaccaacgagtcaataaaaatattgtgattaccaa |
6007074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 17627289 - 17627240
Alignment:
| Q |
349 |
aacatcacaatctcttgaagaaacacacaatttttacacaagtgcaaaag |
398 |
Q |
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|||| ||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
17627289 |
aacaacacaacctcttcgagaaactcacaatttttacacaagtgcaaaag |
17627240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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