View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_15 (Length: 443)
Name: NF11073_low_15
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 95 - 438
Target Start/End: Complemental strand, 16683291 - 16682953
Alignment:
| Q |
95 |
agttccaattaccaagtttctttactttcgaaaaccgaagcattaata-catgaaaaagacaaatgcacggcaactaagttgattcaattaataaaaagt |
193 |
Q |
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| T |
16683291 |
agttccaattaccaagtttcttttctttcgaaaacagaagaattaatatcatgacaaagacaaatgcacatcaactaagttgattcagttaataaaaagt |
16683192 |
T |
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| Q |
194 |
tactctgaatcaacaaagattgaaaatttgattgtttgtatcggtgtagaaacttgttgttggtgaagtgttctatgaggccgataaattccgaaaaact |
293 |
Q |
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| T |
16683191 |
taacctgaatcaacagagactgaaaatttgactgtttgtatcggtgtagaaacttgttgttggtgaagtgttctatgagcccgataaattccgaaaaact |
16683092 |
T |
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| Q |
294 |
ttcttgttcttggataaaaagaaaacacaagaagagtgaaatagcagaatgagaggagagtgggtttcgtgtcctctaaatgcgacaagtcggtgtgacg |
393 |
Q |
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| T |
16683091 |
------ttattggataaaaagaaaacacaagaagagtgcaatagtagaatgagaggagagtgggtttcgtgtcctctaaatgcgacaagtcggtgtgacg |
16682998 |
T |
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| Q |
394 |
tgcttttcgattgcttccttgcgctggcttctttcctttgcttct |
438 |
Q |
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| T |
16682997 |
tgcttttcgattgcttctttgcgctggcttctttcctttgcttct |
16682953 |
T |
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