View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_16 (Length: 436)

Name: NF11073_low_16
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_16
NF11073_low_16
[»] chr1 (39 HSPs)
chr1 (16-429)||(23473580-23474009)
chr1 (163-319)||(40961510-40961666)
chr1 (195-313)||(50139556-50139674)
chr1 (206-326)||(35306740-35306860)
chr1 (16-86)||(17333398-17333468)
chr1 (16-85)||(51065864-51065934)
chr1 (18-85)||(19031933-19032001)
chr1 (17-56)||(15282631-15282670)
chr1 (16-59)||(30294497-30294540)
chr1 (16-67)||(38162869-38162920)
chr1 (16-59)||(39497334-39497377)
chr1 (16-54)||(10976018-10976056)
chr1 (16-85)||(29210413-29210483)
chr1 (16-82)||(45449360-45449426)
chr1 (16-54)||(47532786-47532824)
chr1 (195-253)||(50109055-50109113)
chr1 (195-260)||(50678182-50678247)
chr1 (16-56)||(3097689-3097729)
chr1 (16-56)||(3784829-3784869)
chr1 (16-84)||(19011112-19011180)
chr1 (16-56)||(47010023-47010063)
chr1 (16-86)||(5694320-5694391)
chr1 (206-261)||(42365910-42365965)
chr1 (16-63)||(43286745-43286792)
chr1 (16-85)||(18043162-18043232)
chr1 (16-85)||(29657771-29657841)
chr1 (16-53)||(6770370-6770407)
chr1 (16-65)||(24178579-24178628)
chr1 (215-260)||(41404105-41404150)
chr1 (16-53)||(45431311-45431348)
chr1 (16-85)||(48071483-48071552)
chr1 (16-53)||(50128288-50128325)
chr1 (16-56)||(9266844-9266884)
chr1 (23-83)||(9414002-9414062)
chr1 (58-86)||(10419117-10419145)
chr1 (16-56)||(15227769-15227809)
chr1 (16-83)||(38702049-38702117)
chr1 (16-56)||(51368901-51368941)
chr1 (16-64)||(52749624-52749672)
[»] chr3 (33 HSPs)
chr3 (168-326)||(8925758-8925916)
chr3 (206-312)||(35231810-35231916)
chr3 (19-86)||(2505349-2505416)
chr3 (16-82)||(41554056-41554122)
chr3 (17-70)||(52718183-52718236)
chr3 (16-87)||(52246580-52246652)
chr3 (17-87)||(20923990-20924061)
chr3 (16-85)||(272220-272290)
chr3 (16-85)||(18014672-18014742)
chr3 (16-85)||(41304005-41304075)
chr3 (16-65)||(7468432-7468481)
chr3 (16-65)||(50395678-50395727)
chr3 (16-86)||(4168182-4168253)
chr3 (16-87)||(10617400-10617471)
chr3 (16-86)||(39074418-39074489)
chr3 (195-266)||(42108280-42108351)
chr3 (16-86)||(43786870-43786941)
chr3 (16-86)||(48725270-48725341)
chr3 (16-90)||(49893326-49893401)
chr3 (16-54)||(858621-858659)
chr3 (16-85)||(40362696-40362766)
chr3 (16-85)||(46352634-46352704)
chr3 (16-82)||(50359302-50359368)
chr3 (16-85)||(52520681-52520751)
chr3 (17-54)||(13159929-13159966)
chr3 (195-260)||(27011198-27011263)
chr3 (195-260)||(42029332-42029397)
chr3 (16-84)||(42964365-42964434)
chr3 (16-65)||(53489940-53489989)
chr3 (16-56)||(2119461-2119501)
chr3 (16-56)||(2391637-2391677)
chr3 (16-56)||(2393398-2393438)
chr3 (16-56)||(2938156-2938196)
[»] chr5 (14 HSPs)
chr5 (195-326)||(16597659-16597789)
chr5 (195-314)||(8961663-8961781)
chr5 (195-314)||(30699533-30699651)
chr5 (16-84)||(2619673-2619742)
chr5 (17-85)||(35132522-35132591)
chr5 (16-87)||(35504356-35504428)
chr5 (16-86)||(10069968-10070039)
chr5 (16-67)||(19647774-19647825)
chr5 (16-87)||(34650949-34651020)
chr5 (16-85)||(13661808-13661878)
chr5 (16-89)||(21547510-21547583)
chr5 (16-85)||(40564520-40564588)
chr5 (16-85)||(8787339-8787409)
chr5 (195-336)||(15004230-15004371)
[»] chr8 (34 HSPs)
chr8 (195-313)||(29844255-29844373)
chr8 (16-85)||(11112639-11112709)
chr8 (195-293)||(27325075-27325172)
chr8 (16-85)||(33357245-33357315)
chr8 (16-86)||(37373205-37373275)
chr8 (16-65)||(20831669-20831718)
chr8 (195-318)||(34924730-34924854)
chr8 (16-81)||(36730449-36730514)
chr8 (206-266)||(20989735-20989795)
chr8 (16-86)||(2805376-2805447)
chr8 (16-55)||(10618049-10618088)
chr8 (16-86)||(12652629-12652700)
chr8 (16-85)||(168466-168536)
chr8 (16-85)||(27988615-27988685)
chr8 (16-85)||(28045917-28045987)
chr8 (16-58)||(32113936-32113978)
chr8 (16-85)||(40831281-40831347)
chr8 (16-53)||(7304634-7304671)
chr8 (16-85)||(9063168-9063237)
chr8 (16-85)||(16785087-16785156)
chr8 (17-85)||(4648195-4648263)
chr8 (16-56)||(9537940-9537980)
chr8 (16-84)||(16888660-16888728)
chr8 (16-56)||(42035097-42035137)
chr8 (16-86)||(16394177-16394248)
chr8 (16-86)||(30675688-30675759)
chr8 (16-86)||(34228681-34228752)
chr8 (16-85)||(4537860-4537930)
chr8 (16-85)||(9278212-9278282)
chr8 (16-54)||(16890596-16890634)
chr8 (16-85)||(43119217-43119287)
chr8 (16-65)||(13643033-13643082)
chr8 (16-65)||(13743458-13743507)
chr8 (16-84)||(21595848-21595916)
[»] chr2 (22 HSPs)
chr2 (195-314)||(38022919-38023037)
chr2 (16-86)||(8969523-8969592)
chr2 (16-85)||(34442648-34442717)
chr2 (16-85)||(30486210-30486280)
chr2 (16-85)||(31390012-31390082)
chr2 (16-86)||(43637164-43637234)
chr2 (16-65)||(2898092-2898141)
chr2 (16-87)||(31438644-31438716)
chr2 (16-85)||(561634-561704)
chr2 (16-87)||(20552929-20553001)
chr2 (16-55)||(5881248-5881287)
chr2 (19-85)||(22068438-22068505)
chr2 (16-67)||(22887769-22887820)
chr2 (16-82)||(3668229-3668295)
chr2 (16-85)||(6580189-6580259)
chr2 (206-260)||(7444724-7444778)
chr2 (214-260)||(17999994-18000040)
chr2 (16-54)||(26387180-26387218)
chr2 (16-85)||(32360985-32361055)
chr2 (16-61)||(22567627-22567672)
chr2 (16-56)||(4381825-4381865)
chr2 (25-65)||(29102408-29102448)
[»] chr4 (25 HSPs)
chr4 (195-318)||(41223650-41223774)
chr4 (161-260)||(46944029-46944128)
chr4 (16-87)||(28755619-28755690)
chr4 (16-86)||(32217044-32217115)
chr4 (16-82)||(50619089-50619156)
chr4 (16-85)||(43944507-43944577)
chr4 (195-247)||(25052682-25052734)
chr4 (16-87)||(54897306-54897378)
chr4 (16-55)||(4220226-4220265)
chr4 (17-56)||(12356274-12356313)
chr4 (17-84)||(19503222-19503289)
chr4 (16-59)||(39843934-39843977)
chr4 (16-67)||(52533901-52533952)
chr4 (16-86)||(54655992-54656063)
chr4 (16-85)||(4089142-4089212)
chr4 (16-85)||(18067995-18068065)
chr4 (16-85)||(29591189-29591259)
chr4 (17-55)||(52697083-52697121)
chr4 (16-65)||(7768959-7769008)
chr4 (17-85)||(15186243-15186312)
chr4 (16-85)||(24679758-24679827)
chr4 (16-85)||(37987936-37988005)
chr4 (204-248)||(31151739-31151783)
chr4 (16-56)||(42898862-42898902)
chr4 (16-56)||(54945894-54945934)
[»] scaffold0039 (1 HSPs)
scaffold0039 (195-318)||(56933-57056)
[»] chr6 (24 HSPs)
chr6 (195-266)||(3639124-3639195)
chr6 (16-85)||(23402138-23402208)
chr6 (16-85)||(1391294-1391363)
chr6 (16-85)||(18276731-18276800)
chr6 (16-83)||(2350654-2350722)
chr6 (16-85)||(13529455-13529525)
chr6 (16-86)||(23629692-23629762)
chr6 (16-85)||(29451231-29451300)
chr6 (17-86)||(35043889-35043959)
chr6 (16-56)||(7851275-7851315)
chr6 (16-56)||(20897978-20898018)
chr6 (16-64)||(32985309-32985357)
chr6 (16-56)||(34477666-34477706)
chr6 (16-86)||(392095-392166)
chr6 (16-55)||(21878463-21878502)
chr6 (16-55)||(26467240-26467279)
chr6 (16-87)||(29978231-29978302)
chr6 (16-55)||(34396643-34396682)
chr6 (16-54)||(12145233-12145271)
chr6 (195-293)||(19694574-19694672)
chr6 (16-85)||(27433492-27433562)
chr6 (16-85)||(3026125-3026193)
chr6 (17-85)||(12525719-12525788)
chr6 (16-56)||(3515796-3515836)
[»] chr7 (20 HSPs)
chr7 (195-253)||(29428926-29428984)
chr7 (16-85)||(34606261-34606331)
chr7 (16-84)||(28587911-28587979)
chr7 (16-82)||(11686440-11686507)
chr7 (16-82)||(18117147-18117213)
chr7 (16-85)||(27456229-27456298)
chr7 (16-65)||(30810676-30810725)
chr7 (16-84)||(47656981-47657050)
chr7 (16-86)||(8754701-8754772)
chr7 (17-83)||(22973600-22973667)
chr7 (16-55)||(29993603-29993642)
chr7 (16-55)||(34546430-34546469)
chr7 (17-55)||(4628597-4628635)
chr7 (16-54)||(23357823-23357861)
chr7 (195-260)||(23417263-23417328)
chr7 (16-85)||(24798519-24798588)
chr7 (16-87)||(1736978-1737050)
chr7 (16-56)||(5729376-5729416)
chr7 (19-55)||(28262062-28262098)
chr7 (45-85)||(34557036-34557076)
[»] scaffold0206 (1 HSPs)
scaffold0206 (16-85)||(11086-11154)
[»] scaffold0011 (1 HSPs)
scaffold0011 (195-312)||(9216-9332)
[»] scaffold0524 (1 HSPs)
scaffold0524 (16-54)||(857-895)
[»] scaffold0014 (1 HSPs)
scaffold0014 (16-85)||(68406-68476)
[»] scaffold0022 (2 HSPs)
scaffold0022 (195-260)||(44166-44231)
scaffold0022 (195-260)||(77887-77952)
[»] scaffold0674 (1 HSPs)
scaffold0674 (16-56)||(8013-8053)
[»] scaffold0549 (1 HSPs)
scaffold0549 (16-56)||(7318-7358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (16-67)||(50567-50618)
scaffold0045 (16-61)||(53462-53507)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-85)||(53801-53871)
[»] scaffold1266 (1 HSPs)
scaffold1266 (16-85)||(293-362)
[»] scaffold0264 (1 HSPs)
scaffold0264 (17-85)||(22961-23030)
[»] scaffold0227 (1 HSPs)
scaffold0227 (195-260)||(238-303)
[»] scaffold0188 (1 HSPs)
scaffold0188 (16-84)||(6226-6295)
[»] scaffold0127 (1 HSPs)
scaffold0127 (215-260)||(30185-30230)
[»] scaffold0050 (1 HSPs)
scaffold0050 (17-54)||(69258-69295)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-54)||(147022-147059)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 23473580 - 23474009
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaactagtatattactaatttacttttaca 114  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||| || |||  |||||||||||| ||||||||||||||||||||||||||||||    
T  23473580 cattaactgctatataatctcctttttcatatccttaaccaatgccccaggggcatcagttagcatttctcaactagtatattactaatttacttttaca 23473679  T
Q  115 ttatgaaaagttataattgtatacata--tac--------------tggattgacggatttggatggaatggaatggtatagacaaggattccctagttt 198  Q
    |||||||||||||||||||||||||||  |||              ||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||    
T  23473680 ttatgaaaagttataattgtatacatacatacactaagactttgtttggattgacggatttagatggaatggaatggtatagacaagaattccattgttt 23473779  T
Q  199 ggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaatttatgag 298  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  23473780 ggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatcatctactcttgtttttcattccctccaatttgtgag 23473879  T
Q  299 gtatacaatggaatgaaacaactcaattaattaattacnnnnnnnnncccta-tatcttattccatcacatatcatgtcttcttgtcctccttcatgcat 397  Q
    |||||||||||||||| |||||| ||||||||||||||         ||||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  23473880 gtatacaatggaatgatacaacttaattaattaattac--tttttttccctattttcgtattccatcacatatcatgtcttcttgtcctccttcatgcat 23473977  T
Q  398 tgtgtcttacttctcgaggtgttttcttctct 429  Q
    |||||||| ||||||||||| |||||||||||    
T  23473978 tgtgtcttgcttctcgaggttttttcttctct 23474009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 40961510 - 40961666
Alignment:
Q  163 tggaatggaatggtatagacaaggattccctagtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatc 262  Q
    |||||| |||||||||| | | ||||||| | |||||||||| ||||||||||||| | || ||| ||||||| ||||||| |||| |||||||||||||    
T  40961510 tggaatagaatggtataaatacggattccattgtttggatatataaaaattgaatgtagtgaaatagaatatggtggaatctattccatcctataccatc 40961609  T
Q  263 atctactcttgtttttcattccccccaatttatgaggtatacaatggaatgaaacaa 319  Q
    |||| |||||||||||||||||| |||||||  ||||||||| ||||||||||||||    
T  40961610 atctcctcttgtttttcattccctccaatttgggaggtatacgatggaatgaaacaa 40961666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 50139674 - 50139556
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||| ||||||| || |||||| |||||||||||| |||||||||||||| ||||||||||| ||  | ||||| ||||| |||||  |||||||     
T  50139674 gtttggatttgtaaaattttaatggagtggaatggaataagatggaatccattccatcctataccaccacttcctcttattttttattccatccaatttg 50139575  T
Q  295 tgaggtatacaatggaatg 313  Q
     || |||| ||||||||||    
T  50139574 ggatgtatgcaatggaatg 50139556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 35306860 - 35306740
Alignment:
Q  206 taaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatc-tactcttgtttttcattccccccaatttatgaggtatac 304  Q
    ||||||||| ||||||||| |||||| |||||||||||||||| || | |||||| |||| | ||| | ||||||||||||||||||||  ||||||| |    
T  35306860 taaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctttctc-tatttttcattccccccaatttgggaggtatgc 35306762  T
Q  305 aatggaatgaaacaactcaatt 326  Q
    ||||||||| ||| ||| ||||    
T  35306761 aatggaatggaaccacttaatt 35306740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 17333398 - 17333468
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||||||||||||| || || || ||||  ||||||||||||||    
T  17333398 cattaactactatataatttcctttttcatatccttaaccagtgcccgggggcaccggttagcatttccca 17333468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 51065864 - 51065934
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag-cactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| | |||  |||||||||||||    
T  51065864 cattaactactatataatttactttttcatatccttaaccagtgtcccggggacaccggttagcatttccc 51065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 19031933 - 19032001
Alignment:
Q  18 ttaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccc 85  Q
    |||||||||||||||| | |||||||||||||||||| ||||  ||||||||||  |||||||||||||    
T  19031933 ttaactactatataatttcctttttcatatccttaactaatgcccccggagcaccggttagcatttccc 19032001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 15282631 - 15282670
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaacca 56  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15282631 attaactactatataattttctttttcatatccttaacca 15282670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 30294497 - 30294540
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg 59  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  30294497 cattaactactatataatttcctttttcatatccttaaccaatg 30294540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 38162920 - 38162869
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag 67  Q
    |||||||||||||||||| |||||||||||| ||||||||| || |||||||    
T  38162920 cattaactactatataattttctttttcatacccttaaccagtgccccggag 38162869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39497377 - 39497334
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg 59  Q
    |||||||||||||||||| ||||||||||||||||||| |||||    
T  39497377 cattaactactatataattttctttttcatatccttaatcaatg 39497334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 10976018 - 10976056
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10976018 cattaactactatataatctcctttttcatatccttaac 10976056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 29210483 - 29210413
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||| ||||  |||||||||||||    
T  29210483 cattaactactatataatttcctttttcatacccttaaccagtgccccggaggcaccggttagcatttccc 29210413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 45449360 - 45449426
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcattt 82  Q
    |||||||||||||||||| |||||||| ||||| |||||||||  ||||| |||  |||||||||||    
T  45449360 cattaactactatataattttcttttttatatctttaaccaataccccggggcatcagttagcattt 45449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 47532786 - 47532824
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  47532786 cattaactactatataattttctttttcatatccttaac 47532824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 50109113 - 50109055
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcc 253  Q
    |||||||| ||||| || |||||||| |||||||||| |||||||||||||||| ||||    
T  50109113 gtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcc 50109055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 50678247 - 50678182
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | ||||||||  ||||||||||||||||| | |||||||| ||||||||||| ||||||    
T  50678247 gtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattctatccaatacca 50678182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 3097729 - 3097689
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  3097729 cattaactactatataatttcctttttcatatccttaacca 3097689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 3784829 - 3784869
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  3784829 cattaactactatataatttcctttttcatatccttaacca 3784869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 19011112 - 19011180
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcc 84  Q
    |||||||||||||||||| | |||||||||||||||||||  || |||||  |||  ||||||||||||    
T  19011112 cattaactactatataatttcctttttcatatccttaacccgtgccccgggacaccggttagcatttcc 19011180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 47010063 - 47010023
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  47010063 cattaactactatataatttcctttttcatatccttaacca 47010023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 5694391 - 5694320
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccca 86  Q
    |||||||||||||||||| | | |||| ||||||||||||| || |||||| ||||  ||||||||||||||    
T  5694391 cattaactactatataatttccctttttatatccttaaccagtgccccggaggcaccggttagcatttccca 5694320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 42365910 - 42365965
Alignment:
Q  206 taaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccat 261  Q
    |||||| |||||||||||||||||| | |||||||| |||||| |||| |||||||    
T  42365910 taaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccat 42365965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 43286792 - 43286745
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc 63  Q
    ||||||||| |||||||| | |||||||||||||||||||| ||||||    
T  43286792 cattaactattatataatttcctttttcatatccttaaccagtgtccc 43286745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 18043232 - 18043162
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||| ||| ||||||||| || |||||| ||||  |||||||||||||    
T  18043232 cattaactactatataatttccttttttatacccttaaccagtgccccggaggcaccggttagcatttccc 18043162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 29657841 - 29657771
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||| ||||||||||||| || ||| || ||||  |||||||||||||    
T  29657841 cattaactactatataatttccttttttatatccttaaccagtgccccgggggcaccggttagcatttccc 29657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 6770407 - 6770370
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaa 53  Q
    |||||||||||||||||| | |||||||||||||||||    
T  6770407 cattaactactatataatttcctttttcatatccttaa 6770370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 24178579 - 24178628
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    ||||||||| |||||||| | |||||||||||||||||||| || |||||    
T  24178579 cattaactattatataatttcctttttcatatccttaaccagtgccccgg 24178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 41404105 - 41404150
Alignment:
Q  215 aatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||||||||||||||| |||||||| |||||| ||| |||||||    
T  41404105 aatggaatggaatggaatgtgatggaacccattccatcatatacca 41404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 45431348 - 45431311
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaa 53  Q
    |||||||||||||||||| | |||||||||||||||||    
T  45431348 cattaactactatataatttcctttttcatatccttaa 45431311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 48071552 - 48071483
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||| |||||||| | ||||| |||||||||||||| |  |||||||||   |||||||||||||    
T  48071552 cattaactattatataatttccttttacatatccttaaccagtaccccggagcatcggttagcatttccc 48071483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 50128288 - 50128325
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaa 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  50128288 cattaactactatgtaattttctttttcatatccttaa 50128325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 9266844 - 9266884
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  9266844 cattaaatactatataatttcctttttcatatccttaacca 9266884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 9414002 - 9414062
Alignment:
Q  23 tactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttc 83  Q
    |||| |||||| |||||||| ||||| |||||||||| ||||| ||||  |||||||||||    
T  9414002 tactgtataattttctttttaatatctttaaccaatgccccggggcaccggttagcatttc 9414062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 10419117 - 10419145
Alignment:
Q  58 tgtcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||||||||||||||    
T  10419117 tgtcccggagcactagttagcatttccca 10419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 15227809 - 15227769
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  15227809 cattaattactatataatttcctttttcatatccttaacca 15227769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 38702049 - 38702117
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttc 83  Q
    |||||||||||||||| | | |||||||||| ||||||||| || ||| |||||||  |||||||||||    
T  38702049 cattaactactatatagtttcctttttcatacccttaaccagtgccccgggagcaccggttagcatttc 38702117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 51368901 - 51368941
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  51368901 cattaactactatataatttcctttttcatacccttaacca 51368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 52749672 - 52749624
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccg 64  Q
    ||||||||| |||||||| | |||||||||||| |||||||||| ||||    
T  52749672 cattaactattatataatttcctttttcatatctttaaccaatgccccg 52749624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 8925758 - 8925916
Alignment:
Q  168 tggaatggtatagacaaggattccctagtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatcta 267  Q
    |||||||||||| |||| |||||| | ||||||||||||||||||||||  || |||||||||| ||| ||||||| |||| ||||||||| |||||||     
T  8925758 tggaatggtataaacaaagattccattgtttggatatgtaaaaattgaacagagtggaatggaacatggtggaatctattccatcctatactatcatctc 8925857  T
Q  268 ctcttgtttttcattccccccaatttatgaggtatacaatggaatgaaacaactcaatt 326  Q
     |||| ||||||||||| || ||| |  |||||||||||||||||||||||||| ||||    
T  8925858 gtcttatttttcattcctcctaatctgcgaggtatacaatggaatgaaacaacttaatt 8925916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 35231916 - 35231810
Alignment:
Q  206 taaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatc-tactcttgtttttcattccccccaatttatgaggtatac 304  Q
    ||||||||| ||||||||| |||||| |||||||||||||||| || | |||||| |||| | ||| | ||||||||||||||||||||  ||||||| |    
T  35231916 taaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctttctc-tatttttcattccccccaatttgggaggtatgc 35231818  T
Q  305 aatggaat 312  Q
    ||||||||    
T  35231817 aatggaat 35231810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 2505416 - 2505349
Alignment:
Q  19 taactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    ||||||||||||||| | |||||||||||| ||||||||||||| ||||||   ||||||||||||||    
T  2505416 taactactatataatttcctttttcatatctttaaccaatgtccaggagcagcggttagcatttccca 2505349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 41554056 - 41554122
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcattt 82  Q
    |||||||||||||||||| | |||||||||||||||||||| ||  |||| |||| |||||||||||    
T  41554056 cattaactactatataatttcctttttcatatccttaaccagtgcaccggggcaccagttagcattt 41554122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 52718236 - 52718183
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccggagcac 70  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||| |||||||    
T  52718236 attaactactatataatttcctttttcatatccttaaccagtgtccgggagcac 52718183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 52246652 - 52246580
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttcccaa 87  Q
    ||||||| |||||||||| |  ||||||||||||||||||| || |||||| |||| ||||||||||||||||    
T  52246652 cattaacaactatataatttcatttttcatatccttaaccagtgccccggaggcaccagttagcatttcccaa 52246580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 20924061 - 20923990
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccgg-agcactagttagcatttcccaa 87  Q
    ||||||||||||||||| | |||||||||| ||||||||| || ||||| |||||  |||||||||||||||    
T  20924061 attaactactatataatttcctttttcatacccttaaccagtgccccggaagcaccggttagcatttcccaa 20923990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 272290 - 272220
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || ||||  |||||||||||||    
T  272290 cattaactactatataatttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccc 272220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 18014742 - 18014672
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | ||||||||||||||||| || || ||| || |||| ||||||||||||||    
T  18014742 cattaactactatataatttactttttcatatccttaatcagtgccccgggggcaccagttagcatttccc 18014672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 41304075 - 41304005
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||| ||||||||||| | |||||||||||||||||||| || |||||| ||||  |||||||||||||    
T  41304075 cattaattactatataatttcctttttcatatccttaaccactgccccggaggcaccggttagcatttccc 41304005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7468481 - 7468432
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | ||||||||| |||||||||| ||||||||    
T  7468481 cattaactactatataatttcctttttcatttccttaaccagtgtcccgg 7468432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 50395678 - 50395727
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    ||||||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  50395678 cattaactactgtataattttctttttcatatccctaaccagtgtcccgg 50395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 4168253 - 4168182
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||| ||||||||||||| |  |||||| ||||  ||||||||||||||    
T  4168253 cattaactactatataatttccttttttatatccttaaccagttccccggaggcaccggttagcatttccca 4168182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10617400 - 10617471
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcccaa 87  Q
    |||||||||||||||||| | |||||| |||||||||| || ||||| || ||||  |||| ||||||||||    
T  10617400 cattaactactatataatttccttttttatatccttaatcagtgtccgggggcaccggttaacatttcccaa 10617471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 39074489 - 39074418
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  ||||||||||||||    
T  39074489 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccca 39074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 42108351 - 42108280
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatct 266  Q
    |||||||||| |||||| ||| ||||||||||||| | ||||||||||| |||| || | || |||||||||    
T  42108351 gtttggatatttaaaaaatgagtggaatggaatggtacatgatggaatctattccattccattccatcatct 42108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 43786941 - 43786870
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||| | ||||||| || |||||| ||||  ||||||||||||||    
T  43786941 cattaactactatataatttcctttttcataccattaaccagtgccccggaggcaccggttagcatttccca 43786870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 48725341 - 48725270
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccca 86  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||  ||||| ||||  ||||||||||||||    
T  48725341 cattaattactatataatttcctttttcatatccttaaccagtgcccccggggcaccggttagcatttccca 48725270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 49893401 - 49893326
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaacta 90  Q
    ||||||||| |||||||| | |||||||||||||||||||| || ||| || ||||  ||||||||||||| ||||    
T  49893401 cattaactattatataatttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccctacta 49893326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 858659 - 858621
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  858659 cattaactactatataatttcctttttcatatccttaac 858621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40362696 - 40362766
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| |  |||||||||||||||| || || |||||| ||||  |||||||||||||    
T  40362696 cattaactactatataatttcttttttcatatccttaatcagtgccccggaggcacgggttagcatttccc 40362766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 46352704 - 46352634
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    ||||||||||| |||||| | |||||||||||||||||||| || ||| || ||||  |||||||||||||    
T  46352704 cattaactactgtataatttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccc 46352634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 50359302 - 50359368
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcattt 82  Q
    |||||||||||||||||| || |||||| || ||||||||| || | ||| |||| |||||||||||    
T  50359302 cattaactactatataattttttttttcttaaccttaaccagtgccacggggcaccagttagcattt 50359368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 52520751 - 52520681
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  |||||||||||||    
T  52520751 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 52520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13159966 - 13159929
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaac 54  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  13159966 attaactactatataatttcctttttcatatccttaac 13159929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 27011198 - 27011263
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | ||||||||  ||||||||||||||||| | |||||||| |||||| |||| ||||||    
T  27011198 gtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattccatccaatacca 27011263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 42029397 - 42029332
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | ||||||||  | ||||||||||||||| |||||||||| |||||| |||| ||||||    
T  42029397 gtttggttttgtaaaaaagggatggaatggaatggagtatgatggaacccattccatccaatacca 42029332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 42964365 - 42964434
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg-agcactagttagcatttcc 84  Q
    |||||||||||||| ||| |  ||||||||||||||||||| || ||||| ||||| ||||| |||||||    
T  42964365 cattaactactataaaatttcatttttcatatccttaaccagtgccccggaagcaccagttaacatttcc 42964434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 53489940 - 53489989
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||    
T  53489940 cattaactactatataatttcctttttcatacccttaaccagtgccccgg 53489989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 2119501 - 2119461
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | |||||||||||| |||||||    
T  2119501 cattaactactatataatttcctttttcatatctttaacca 2119461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 2391677 - 2391637
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||| ||||||||||||    
T  2391677 cattaactactatataatttcctttttcttatccttaacca 2391637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 2393438 - 2393398
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||| ||||||||||||    
T  2393438 cattaactactatataatttcctttttcttatccttaacca 2393398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 2938156 - 2938196
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  2938156 cattaactactatataattttcttttttatatctttaacca 2938196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 195 - 326
Target Start/End: Complemental strand, 16597789 - 16597659
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||| | ||||||||| ||||||||| |||||| ||||||||||| ||||||||| |||||| |||||  |||   ||||||||||||||||||||    
T  16597789 gtttggatttataaaaattggatggaatggcatggaacatgatggaatctattctatcccataccaccatct-ttctctattttcattccccccaattta 16597691  T
Q  295 tgaggtatacaatggaatgaaacaactcaatt 326  Q
     ||||||| |||||||||| ||| ||| ||||    
T  16597690 ggaggtatgcaatggaatggaaccacttaatt 16597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 8961663 - 8961781
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| |||| || ||||||||| | |||  |||||||||| ||||||||     
T  8961663 gtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcccattccatcatcttc-ctttattttcattcctcccaatttg 8961761  T
Q  295 tgaggtatacaatggaatga 314  Q
     |  ||||| ||||||||||    
T  8961762 gggtgtatagaatggaatga 8961781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 30699533 - 30699651
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| |||| || ||||||||| | |||  |||||||||| ||||||||     
T  30699533 gtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcccattccatcatcttc-ctttattttcattcctcccaatttg 30699631  T
Q  295 tgaggtatacaatggaatga 314  Q
     |  ||||| ||||||||||    
T  30699632 gggtgtatagaatggaatga 30699651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 2619673 - 2619742
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag-cactagttagcatttcc 84  Q
    |||||||||||| ||||| |||||||||||||||||||| | |||||||||| ||| |||||||||||||    
T  2619673 cattaactactaaataattttctttttcatatccttaacaagtgtcccggagacaccagttagcatttcc 2619742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 35132591 - 35132522
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||| || ||||  |||||||||||||    
T  35132591 attaactactatataatttcctttttcatatccttaaccagtgtcccgggggcaccggttagcatttccc 35132522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 35504356 - 35504428
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaa 87  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||| || ||||  |||||||||||||||    
T  35504356 cattaactactatataatttcctttttcatacccttaaccagtgtcccgggggcaccggttagcatttcccaa 35504428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 10070039 - 10069968
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || ||||  ||||||||||||||    
T  10070039 cattaactactatataatttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccca 10069968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 19647774 - 19647825
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag 67  Q
    |||||||||||||||||| | |||||||||||||||||||| || |||||||    
T  19647774 cattaactactatataatttcctttttcatatccttaaccagtgccccggag 19647825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34650949 - 34651020
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcccaa 87  Q
    |||||||||||||||||| | |||||||||| ||||||||| || || || ||||  |||||||||||||||    
T  34650949 cattaactactatataatttcctttttcatacccttaaccagtgcccgggggcaccggttagcatttcccaa 34651020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 13661878 - 13661808
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || ||||  |||||||||||||    
T  13661878 cattaactactatataatttcctttttcatatccttaaccagtgctccgggggcaccggttagcatttccc 13661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 21547510 - 21547583
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcccaact 89  Q
    |||||||||||||||||| | |||||| |||||||||||| ||| || ||  |||  |||||||||||||||||    
T  21547510 cattaactactatataatttccttttttatatccttaaccgatgcccggggacaccggttagcatttcccaact 21547583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40564520 - 40564588
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||| |||||||| | |||||||||| |||  |||||||||||||    
T  40564520 cattaactactatataatttcctttttcaaatccttaatcgatgtcccgga-caccggttagcatttccc 40564588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8787409 - 8787339
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag-cactagttagcatttccc 85  Q
    |||||||||||||||||| |  ||||||||| |||||||||||| ||||| | |||  |||||||||||||    
T  8787409 cattaactactatataatttcatttttcatacccttaaccaatgccccggggacaccggttagcatttccc 8787339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 15004230 - 15004371
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||| ||| ||| |||| |||||| ||||| |||||| |  ||||||||||||| |||| |||||| | | | || || |||||| |||||| |||||||    
T  15004230 gttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaatccattccatcccataccaccgtttccttttatttttccttcccctcaattta 15004329  T
Q  295 tgaggtatacaatggaatgaaacaactcaattaattaattac 336  Q
     |  ||||  ||||||||||||||  | |||||| |||||||    
T  15004330 gggtgtatttaatggaatgaaacattttaattaaataattac 15004371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 29844255 - 29844373
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||| ||||||| || |||||| || |||||||||||||||||||||||| ||||||||||| ||  | ||||| ||||||||||   |||||||     
T  29844255 gtttggatttgtaaaattttaatggagtgaaatggaatatgatggaatccattccatcctataccaccacttcctcttatttttcattctatccaatttg 29844354  T
Q  295 tgaggtatacaatggaatg 313  Q
     ||||||| ||||||||||    
T  29844355 ggaggtatgcaatggaatg 29844373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 11112709 - 11112639
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  11112709 cattaactactatataatttcctttttcatatccttaaccagtgtcccggatgcaccagttagcatttccc 11112639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 27325075 - 27325172
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattt 293  Q
    |||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| |||| || ||||||||| | |||  |||||||||| ||||||||    
T  27325075 gtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcccattccatcatcttc-ctttattttcattcctcccaattt 27325172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 33357245 - 33357315
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || |||| ||||||||||||||    
T  33357245 cattaactactatataatttcctttttcatatccttaaccagtgctccgggggcaccagttagcatttccc 33357315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 37373275 - 37373205
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    ||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||  ||||||||||||||    
T  37373275 cattaactattatataatttcctttttcatatccttaaccagtgtccgggggcaccggttagcatttccca 37373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 20831669 - 20831718
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  20831669 cattaactactatataatttcctttttcatatccttaaccagtgtcccgg 20831718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 34924854 - 34924730
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcc-tatacca-tcatctactcttgtttttcattccccccaatt 292  Q
    |||||| |||||||||| |||||||||||||||||| | |||||||| |||||| ||||  |||||| |||| || || | ||||||||||||||||| |    
T  34924854 gtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaaataccactcatttagtcat-tttttcattccccccaaat 34924756  T
Q  293 tatgaggtatacaatggaatgaaaca 318  Q
    |  |||||||  ||||||||| ||||    
T  34924755 tgggaggtatctaatggaatggaaca 34924730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 36730514 - 36730449
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatt 81  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||| || |||| ||||||||||    
T  36730514 cattaactactatataatttcctttttcatatccttaactagtgtcctggggcaccagttagcatt 36730449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 20989735 - 20989795
Alignment:
Q  206 taaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatct 266  Q
    |||||| ||||||||||||||||||| | |||||||||||||| ||||||| ||| |||||    
T  20989735 taaaaaatgaatggaatggaatggaacaagatggaatccattccatcctatgccaccatct 20989795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 2805376 - 2805447
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    ||||||||| |||||||| | |||||||||||||||||||| |||||| || ||||| |||| |||||||||    
T  2805376 cattaactattatataatttcctttttcatatccttaaccagtgtcccgggggcactggttaacatttccca 2805447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 10618088 - 10618049
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  10618088 cattaactactatataattttctttttcatatccttaacc 10618049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 12652700 - 12652629
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || ||||  ||||||||||||||    
T  12652700 cattaactactatataatttcctttttcatatccttaaccagtgctccaggggcaccggttagcatttccca 12652629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 168536 - 168466
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||| ||||  |||||||||||||    
T  168536 cattaactactatataatttcctttttcatacccttaaccagtgccccggaggcaccggttagcatttccc 168466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 27988615 - 27988685
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    ||||||||| |||||||| | |||||||||||||||||||| || |||||| ||||  |||||||||||||    
T  27988615 cattaactattatataatttcctttttcatatccttaaccagtgccccggaggcaccggttagcatttccc 27988685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 28045917 - 28045987
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    ||||||||| |||||||| | |||||||||||||||||||| || |||||| ||||  |||||||||||||    
T  28045917 cattaactattatataatttcctttttcatatccttaaccagtgccccggaggcaccggttagcatttccc 28045987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 32113978 - 32113936
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaat 58  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  32113978 cattaactactatataatttcctttttcatatccttaaccaat 32113936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 40831347 - 40831281
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| |||||||||||||| |||||||  || |||| ||||| |||||||||||||    
T  40831347 cattaactactatataattttctttttcatatctttaacca--gtgccgg-gcactggttagcatttccc 40831281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7304634 - 7304671
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaa 53  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7304634 cattaactactatataattttctttttcatatccttaa 7304671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 9063168 - 9063237
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| ||  ||||  |||  |||||||||||||    
T  9063168 cattaactactatataatttcctttttcatatccttaaccagtgctccgggacaccggttagcatttccc 9063237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 16785156 - 16785087
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||| ||||||||| |  ||||||||||||||||||| || || |||||||  |||||||||||||    
T  16785156 cattaactgctatataatttcttttttcatatccttaaccagtgccctggagcaccggttagcatttccc 16785087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 4648263 - 4648195
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||||||||||| | ||||||||||||||||| || || |||||  |||  |||||||||||||    
T  4648263 attaactactatataatttcctttttcatatccttaatcagtgccccgggacaccggttagcatttccc 4648195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 9537940 - 9537980
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  9537940 cattaactactatataatttcctttttcatatccttaacca 9537980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 16888660 - 16888728
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcc 84  Q
    |||||||||||||||||| | |||||||||||||||||||  || || || ||||  ||||||||||||    
T  16888660 cattaactactatataatttcctttttcatatccttaacctgtgcccgggggcaccggttagcatttcc 16888728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42035097 - 42035137
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  42035097 cattaactactatataatttcctttttcatatccttaacca 42035137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 16394177 - 16394248
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    ||||||||| |||||||| |||||||||| ||||||||||| || ||| || ||||  ||||||||||||||    
T  16394177 cattaactattatataattttctttttcacatccttaaccagtgccccgggggcaccggttagcatttccca 16394248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 30675688 - 30675759
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  ||||||||||||||    
T  30675688 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccca 30675759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 34228752 - 34228681
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccca 86  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||  ||||| ||||  ||||||||||||||    
T  34228752 cattaattactatataatttcctttttcatatccttaaccagtgcccccggggcaccggttagcatttccca 34228681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 4537860 - 4537930
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | || ||| ||||||||||||| || |||||| ||||  |||||||||||||    
T  4537860 cattaactactatataatttcctattttatatccttaaccagtgccccggaggcaccggttagcatttccc 4537930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 9278282 - 9278212
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    ||||||||| |||||||| | |||||||||||| ||||| | |||||| || |||| ||||||||||||||    
T  9278282 cattaactattatataatttcctttttcatatctttaacgagtgtccctgaggcaccagttagcatttccc 9278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 16890596 - 16890634
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  16890596 cattaactactatataatttcctttttcatatccttaac 16890634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 43119287 - 43119217
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccg-gagcactagttagcatttccc 85  Q
    |||||||||||||||||| |||||||||||||| |||| || || |||| | ||||  |||||||||||||    
T  43119287 cattaactactatataattttctttttcatatctttaatcagtgccccgagggcaccggttagcatttccc 43119217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 13643082 - 13643033
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | ||||||| |||||||||||| || |||||    
T  13643082 cattaactactatataatttcctttttcgtatccttaaccagtgccccgg 13643033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 13743507 - 13743458
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | ||||||| |||||||||||| || |||||    
T  13743507 cattaactactatataatttcctttttcgtatccttaaccagtgccccgg 13743458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21595916 - 21595848
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcc 84  Q
    |||||||| ||||||||| | |||||||||| ||||||||| || || || ||||  ||||||||||||    
T  21595916 cattaactcctatataatttcctttttcatacccttaaccagtgcccgggggcaccggttagcatttcc 21595848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 38023037 - 38022919
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    |||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| |||| || ||||||||| | |||  |||||||||| ||||||||     
T  38023037 gtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcccattccatcatcttc-ctttattttcattcctcccaatttg 38022939  T
Q  295 tgaggtatacaatggaatga 314  Q
     |  ||||| ||||||||||    
T  38022938 gggtgtatagaatggaatga 38022919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 8969523 - 8969592
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| |||||||||||||||||||| | || ||||| ||||| ||||||||||||||    
T  8969523 cattaactactatataattttctttttcatatccttaactagtg-cccggggcactggttagcatttccca 8969592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 34442648 - 34442717
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||||||||||||||||||||||||   || ||||| ||||  |||||||||||||    
T  34442648 cattaactactatataatcttctttttcatatccttaacatgtgccccggggcaccggttagcatttccc 34442717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 30486280 - 30486210
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || |||| ||||||||||||||    
T  30486280 cattaactactatataatttcctttttcatatccttaaccagtgccccgggggcaccagttagcatttccc 30486210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 31390082 - 31390012
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||| | || |||||| |||| ||||||||||||||    
T  31390082 cattaactactatataatttcctttttcatatccttaactagtgccccggaggcaccagttagcatttccc 31390012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 43637234 - 43637164
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | ||| |||||||||||||||| |||| ||| ||||  ||||||||||||||    
T  43637234 cattaactactatataatttccttattcatatccttaaccagtgtctcggggcaccggttagcatttccca 43637164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 2898141 - 2898092
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  2898141 cattaactactatataattttctttttcatatccttaaccagtgttccgg 2898092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 31438716 - 31438644
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaa 87  Q
    ||||||||||| |||||| | |||||||||||||||||||| || ||| |||||||  |||||||||||||||    
T  31438716 cattaactactgtataatttcctttttcatatccttaaccagtgccccgggagcaccggttagcatttcccaa 31438644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 561634 - 561704
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| || ||||  |||||||||||||    
T  561634 cattaactactatataatttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccc 561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 20553001 - 20552929
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttcccaa 87  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||  ||||| ||||  |||||||||||||||    
T  20553001 cattaattactatataatttcctttttcatatccttaaccagtgcccccggggcaccggttagcatttcccaa 20552929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 5881287 - 5881248
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  5881287 cattaactactatataatttcctttttcatatccttaacc 5881248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 22068438 - 22068505
Alignment:
Q  19 taactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||   |||||||||||||||||||| || ||| || ||||| |||||||||||||    
T  22068438 taactactatataattccctttttcatatccttaaccagtgccccgggggcacttgttagcatttccc 22068505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 22887820 - 22887769
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag 67  Q
    |||||||||||||||||| |  ||||||||||||||||||| || |||||||    
T  22887820 cattaactactatataatttcttttttcatatccttaaccactgccccggag 22887769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 3668229 - 3668295
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcattt 82  Q
    |||||||||||||||||| | ||||| |||| ||||||||| ||||| || ||||  ||||||||||    
T  3668229 cattaactactatataatttccttttccatacccttaaccagtgtccgggggcaccggttagcattt 3668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 6580259 - 6580189
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccc 85  Q
    |||||||||||||||| | | |||||||||| ||||||||| ||  ||||| ||||| |||||||||||||    
T  6580259 cattaactactatatagtttcctttttcatacccttaaccagtgcccccggggcactggttagcatttccc 6580189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 7444778 - 7444724
Alignment:
Q  206 taaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| |||||||||||||||||| | |||||||| |||||| |||| ||||||    
T  7444778 taaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 7444724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 18000040 - 17999994
Alignment:
Q  214 gaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||| |||||||||||| | |||||||||||||||||||| ||||||    
T  18000040 gaattgaatggaatggagtgtgatggaatccattctatccaatacca 17999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 26387180 - 26387218
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  26387180 cattaactactatataatttcctttttcatatccttaac 26387218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 32360985 - 32361055
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    ||||||||| |||||||| |||||||||| ||||||||||| || ||| || ||||  |||||||||||||    
T  32360985 cattaactattatataattttctttttcacatccttaaccagtgccccgggggcaccggttagcatttccc 32361055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 22567672 - 22567627
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtc 61  Q
    |||||||||||||||||| |  ||||||||||||||||||| ||||    
T  22567672 cattaactactatataatttcttttttcatatccttaaccagtgtc 22567627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 4381865 - 4381825
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  4381865 cattaactactatataatttcctttttcatacccttaacca 4381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 29102408 - 29102448
Alignment:
Q  25 ctatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    ||||||||| |||||||| |||| |||||||||||||||||    
T  29102408 ctatataattttctttttgatattcttaaccaatgtcccgg 29102448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 41223774 - 41223650
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcc-tatacca-tcatctactcttgtttttcattccccccaatt 292  Q
    |||||| |||||||||| |||||||||||||||||| | |||||||| |||||| ||||  |||||| |||| || || | ||||||||||||||||| |    
T  41223774 gtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaaataccactcatttagtcat-tttttcattccccccaaat 41223676  T
Q  293 tatgaggtatacaatggaatgaaaca 318  Q
    |  ||||||| |||||||||| ||||    
T  41223675 tgggaggtatccaatggaatggaaca 41223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 46944029 - 46944128
Alignment:
Q  161 gatggaatggaatggtatagacaaggattccctagtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    ||||||||||||||| |||||  |  ||||| | |||||| |||||||||| |||||||||||||||||| | ||||||||  ||||| |||| ||||||    
T  46944029 gatggaatggaatgggatagatcaacattccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaatacca 46944128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 28755690 - 28755619
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcccaa 87  Q
    |||||||||||||||||| | |||||||||||||||||||| || || ||  |||  |||||||||||||||    
T  28755690 cattaactactatataatttcctttttcatatccttaaccagtgccctgggacaccggttagcatttcccaa 28755619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 32217115 - 32217044
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||| ||||||||||||| || ||| || |||| |||||||||||||||    
T  32217115 cattaactactatataatttccttttttatatccttaaccagtgccccgggggcaccagttagcatttccca 32217044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 50619156 - 50619089
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcattt 82  Q
    |||||||||||||||||| ||||||||||||| ||||| || || ||| ||||||| |||||||||||    
T  50619156 cattaactactatataattttctttttcatattcttaatcagtgccccgggagcaccagttagcattt 50619089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 43944577 - 43944507
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||| ||||  |||||||||||||    
T  43944577 cattaactactatataatttcctttttcatacccttaaccagtgccccggaggcaccggttagcatttccc 43944507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 25052682 - 25052734
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccatt 247  Q
    |||||||| ||||||| || |||||||||| |||||| |||||||||||||||    
T  25052682 gtttggatttgtaaaattttaatggaatgggatggaacatgatggaatccatt 25052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 54897378 - 54897306
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaa 87  Q
    |||||||||||||||||| | |||| ||||||||||||||| || ||| || ||||  |||||||||||||||    
T  54897378 cattaactactatataatttcctttctcatatccttaaccagtgccccgggggcaccggttagcatttcccaa 54897306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 4220265 - 4220226
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  4220265 cattaactactatataatttcctttttcatatccttaacc 4220226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 12356313 - 12356274
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaacca 56  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  12356313 attaactactatataatttcctttttcatatccttaacca 12356274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 19503222 - 19503289
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcc 84  Q
    |||||||| |||||||| | |||||||||||||||||||| |  || |||||||  ||||||||||||    
T  19503222 attaactagtatataatttcctttttcatatccttaaccagtacccgggagcaccggttagcatttcc 19503289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39843977 - 39843934
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg 59  Q
    |||||||||||||||||| |  ||||||||||||||||||||||    
T  39843977 cattaactactatataatttcatttttcatatccttaaccaatg 39843934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 52533901 - 52533952
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag 67  Q
    |||||||||||||||||| | ||||||||||| |||||||| ||||| ||||    
T  52533901 cattaactactatataatttcctttttcatattcttaaccagtgtcctggag 52533952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 54655992 - 54656063
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||| ||||||||||||| ||  |||||| ||| ||||| |||||||||    
T  54655992 cattaactactatataatttccttttttatatccttaaccagtgcccccggaacaccagttaacatttccca 54656063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 4089212 - 4089142
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| |||||||||||| |||||| || || ||| || ||||  |||||||||||||    
T  4089212 cattaactactatataattttctttttcatacccttaatcagtgccccaggggcaccggttagcatttccc 4089142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 18067995 - 18068065
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  |||||||||||||    
T  18067995 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 18068065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 29591259 - 29591189
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | ||| ||||||| |||||||| || ||| || |||| ||||||||||||||    
T  29591259 cattaactactatataatttccttattcatattcttaaccagtgccccgggggcaccagttagcatttccc 29591189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 52697121 - 52697083
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaacc 55  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  52697121 attaactactatataattttgtttttcatatccttaacc 52697083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7769008 - 7768959
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||    
T  7769008 cattaactactatataatttcctttttcatacccttaaccagtgccccgg 7768959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 15186312 - 15186243
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    ||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  |||||||||||||    
T  15186312 attaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 15186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 24679758 - 24679827
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| |  ||||||||||||||||||| || ||||   |||  |||||||||||||    
T  24679758 cattaactactatataatttcttttttcatatccttaaccagtgccccgagacaccggttagcatttccc 24679827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 37988005 - 37987936
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| |  || |||||||  |||| ||||||||    
T  37988005 cattaactactatataatttcctttttcatacccttaaccattaccctggagcaccggttaacatttccc 37987936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 31151739 - 31151783
Alignment:
Q  204 tgtaaaaattgaatggaatggaatggaatatgatggaatccattc 248  Q
    |||||||| ||||| ||||||||||||| || |||||||||||||    
T  31151739 tgtaaaaaatgaatagaatggaatggaacataatggaatccattc 31151783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42898862 - 42898902
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  42898862 cattaactactatataatttccttttttatatccttaacca 42898902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 54945894 - 54945934
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  54945894 cattaactgctatataatttcctttttcatatccttaacca 54945934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 56933 - 57056
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca-tcatctactcttgtttttcattccccccaattt 293  Q
    |||||| |||||||||| ||||||||||||||| || | |||||||| | |||| |||| |||||| |||| || || | ||||||||||||||||| ||    
T  56933 gtttggttatgtaaaaaatgaatggaatggaatagagtgtgatggaaccaattccatccaataccactcatttagtcat-tttttcattccccccaaatt 57031  T
Q  294 atgaggtatacaatggaatgaaaca 318  Q
      ||||||| |||||||||| ||||    
T  57032 gggaggtatccaatggaatggaaca 57056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 3639124 - 3639195
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatct 266  Q
    |||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| |||| || |||||||||    
T  3639124 gtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcccattccatcatct 3639195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 23402208 - 23402138
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||| ||||||||||| | |||||||||||||||||||| || |||||| |||| ||||||||||||||    
T  23402208 cattaattactatataatttcctttttcatatccttaaccagtgccccggaggcaccagttagcatttccc 23402138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 1391294 - 1391363
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | ||||||||||||||||| || |  ||||||||||  |||||||||||||    
T  1391294 cattaactactatataatttcctttttcatatccttaatcagtaccccggagcaccggttagcatttccc 1391363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 18276731 - 18276800
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||| || || || |||| ||||| ||||||||    
T  18276731 cattaactactatataatttcctttttcatatccttaaccagtgcccaggggcaccagttaacatttccc 18276800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 2350722 - 2350654
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttc 83  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||| |||||||  |||||||||||    
T  2350722 cattaactactatataatttcctttttcatatccttaaccagtgccccgggagcaccggttagcatttc 2350654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 13529525 - 13529455
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||| ||||||||||| || |||| | |||| ||||||||||||||    
T  13529525 cattaactactatataatttcctttttcacatccttaaccagtgccccgaaggcacaagttagcatttccc 13529455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 23629692 - 23629762
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| ||||||||||||||||||| || || ||||| |||   |||| |||||||||    
T  23629692 cattaactactatataattttctttttcatatccttaatcagtgccccggggcatcggttaacatttccca 23629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 29451231 - 29451300
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||||||||  || |||||| |||| ||||||||||||||    
T  29451231 cattaactactatataatttcctttttcatatccttaaccggtg-cccggaggcaccagttagcatttccc 29451300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 35043959 - 35043889
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccg-gagcactagttagcatttccca 86  Q
    ||||||||||||||||| |  ||||||||||||||||||| ||||||| |  ||| |||||||||||||||    
T  35043959 attaactactatataatttcttttttcatatccttaaccagtgtcccgtggacaccagttagcatttccca 35043889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 7851275 - 7851315
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  7851275 cattaattactatataattttctttttcatatccttaacca 7851315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 20898018 - 20897978
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  20898018 cattaactactatataatttcctttttcatatccttaacca 20897978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 32985309 - 32985357
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccg 64  Q
    |||||||||||||||||| | |||||| |||||||||||||||| ||||    
T  32985309 cattaactactatataatttccttttttatatccttaaccaatgccccg 32985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 34477666 - 34477706
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  34477666 cattaactactatataatttcctttttcatatccttaacca 34477706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 392166 - 392095
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccca 86  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  ||||||||||||||    
T  392166 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccca 392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 21878463 - 21878502
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  21878463 cattaactactatataatttcctttttcatatccttaacc 21878502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 26467240 - 26467279
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  26467240 cattaactactatataatttcctttttcatatccttaacc 26467279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 29978302 - 29978231
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcccaa 87  Q
    |||||| ||||||||||| | |||||||||||||||||| | ||||| |  ||||  |||||||||||||||    
T  29978302 cattaaatactatataatttcctttttcatatccttaactagtgtccggaggcaccggttagcatttcccaa 29978231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 34396643 - 34396682
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  34396643 cattaactactatataatttcctttttcatatccttaacc 34396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 12145233 - 12145271
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  12145233 cattaactactatataatttcctttttcatatccttaac 12145271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 19694672 - 19694574
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattt 293  Q
    |||||||| || ||||| | ||||||| ||||||||| || ||||||||||||| |||| || ||||||  | ||    ||||||||||||||||||||    
T  19694672 gtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaattt 19694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27433562 - 27433492
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  |||||||||||||    
T  27433562 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 27433492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 3026125 - 3026193
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||||| |||||| |  ||||||||| ||||||||| || ||||| |||| ||||||||||||||    
T  3026125 cattaactactgtataatttcatttttcatacccttaaccagtg-cccggggcaccagttagcatttccc 3026193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 12525788 - 12525719
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    ||||||||||||||||| | |||||||||| ||||||||| |  |||||| ||||  |||||||||||||    
T  12525788 attaactactatataatttcctttttcatacccttaaccagtaccccggaggcaccggttagcatttccc 12525719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 3515836 - 3515796
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  3515836 cattaactactatataatttcctttttcatacccttaacca 3515796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 29428926 - 29428984
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcc 253  Q
    |||||||| |||||||| |||||||||||||||| || |||||||||||||||| ||||    
T  29428926 gtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattccatcc 29428984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 34606331 - 34606261
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttccc 85  Q
    |||||| ||||||||||| | |||||||||||||||||||| || |||||| |||| ||||||||||||||    
T  34606331 cattaattactatataatttcctttttcatatccttaaccagtgccccggaggcaccagttagcatttccc 34606261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 28587979 - 28587911
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttcc 84  Q
    |||| ||||||||||||| | |||||||||||||||||||| ||||| || ||||  ||||||||||||    
T  28587979 cattgactactatataatttcctttttcatatccttaaccagtgtccgggggcaccggttagcatttcc 28587911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 11686440 - 11686507
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg-agcactagttagcattt 82  Q
    |||||||||||||||||| | |||||| ||||||||||||| | |||||| ||||| |||||||||||    
T  11686440 cattaactactatataatttccttttttatatccttaaccagtatcccggaagcaccagttagcattt 11686507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 18117213 - 18117147
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcattt 82  Q
    |||||||||||||||||| | || |||||||| |||||| ||||||||||||||   ||||||||||    
T  18117213 cattaactactatataatttcctctttcatatacttaacaaatgtcccggagcatcggttagcattt 18117147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 27456229 - 27456298
Alignment:
Q  16 cattaactactatataatcttcttttt-catatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| |||||||| |||||||||||||| || || || |||| ||||||||||||||    
T  27456229 cattaactactatataat-ttctttttccatatccttaaccagtgcccgggggcaccagttagcatttccc 27456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 30810725 - 30810676
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccgg 65  Q
    |||||||||||||||||| | |||||||||||||||||||| || |||||    
T  30810725 cattaactactatataatttcctttttcatatccttaaccagtgccccgg 30810676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 47657050 - 47656981
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttcc 84  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||  |||| |||||  ||||||||||||    
T  47657050 cattaattactatataattttctttttcatatccttaaccagtgcccccgaagcaccggttagcatttcc 47656981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 8754701 - 8754772
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccca 86  Q
    |||||||||||||||||| |  ||||||||||||||||||| || |||| | ||||  ||||||||||||||    
T  8754701 cattaactactatataatttcatttttcatatccttaaccagtgctcccagggcaccggttagcatttccca 8754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 22973667 - 22973600
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatgtcccgga-gcactagttagcatttc 83  Q
    ||||||||||||||||| |  ||||| ||||| ||||||| || |||||| |||||||||||||||||    
T  22973667 attaactactatataatttctttttttatatcattaaccagtgccccggaggcactagttagcatttc 22973600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 29993603 - 29993642
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  29993603 cattaactactatataatttcctttttcatatccttaacc 29993642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 34546430 - 34546469
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacc 55  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  34546430 cattaactactatataatttcctttttcatatccttaacc 34546469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 4628635 - 4628597
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaacc 55  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  4628635 attaactactatataatttcctttttcatatccttaacc 4628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 23357823 - 23357861
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  23357823 cattaactactatacaattttctttttcatatccttaac 23357861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 23417328 - 23417263
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | ||||||||  ||||||||||| ||||| |||||||||| |||||| |||| ||||||    
T  23417328 gtttggttttgtaaaaaaggaatggaatggcatggagtatgatggaacccattccatccaatacca 23417263  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 24798519 - 24798588
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||||||| ||| | || || || ||||  |||||||||||||    
T  24798519 cattaactactatataatttcctttttcatatcctcaacaagtgcccgggggcaccggttagcatttccc 24798588  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1737050 - 1736978
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcccaa 87  Q
    ||||||||| |||||||| |  ||||||||||||||||||| || ||| | |||||  |||||||||||||||    
T  1737050 cattaactattatataatttcatttttcatatccttaaccagtgccccagaagcaccggttagcatttcccaa 1736978  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 5729416 - 5729376
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    ||||||||| |||||||| | ||||||||||||||||||||    
T  5729416 cattaactattatataatttcctttttcatatccttaacca 5729376  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 28262098 - 28262062
Alignment:
Q  19 taactactatataatcttctttttcatatccttaacc 55  Q
    ||||||||||||||| | |||||||||||||||||||    
T  28262098 taactactatataatttcctttttcatatccttaacc 28262062  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 34557036 - 34557076
Alignment:
Q  45 tatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34557036 tatccttaaccaatgccccggggcaccagttagcatttccc 34557076  T

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Target: scaffold0206 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 11086 - 11154
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||| |||||||| | |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  11086 cattaactaatatataatttcctttttcatatccttaaccagtgt-ccggggcaccagttagcatttccc 11154  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 9332 - 9216
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctataccatcatctactcttgtttttcattccccccaattta 294  Q
    ||||| || ||||||| || |||||| |||||| |||||||||||||||||||| ||||||| ||| ||  | |||||  ||||||||||  |||||||     
T  9332 gtttgaatttgtaaaattttaatggagtggaattgaatatgatggaatccattccatcctatgccaccacttcctctt-attttcattccatccaatttg 9234  T
Q  295 tgaggtatacaatggaat 312  Q
     ||||||| |||||||||    
T  9233 ggaggtatgcaatggaat 9216  T

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Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 895 - 857
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaac 54  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  895 cattaactactatataattttctttttcatatccttaac 857  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 68406 - 68476
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| |  ||||||||||||||||||| || ||| || |||| ||||||||||||||    
T  68406 cattaactactatataatttcatttttcatatccttaaccagtgccccgggggcaccagttagcatttccc 68476  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 44231 - 44166
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | |||||||| |||||||||||||||||| | |||||||| |||||| |||| ||||||    
T  44231 gtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 44166  T

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Target: scaffold0022; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 77952 - 77887
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | |||||||| |||||||||||||||||| | |||||||| |||||| |||| ||||||    
T  77952 gtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 77887  T

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Target: scaffold0674 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 8013 - 8053
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  8013 cattaactactatataatttcctttttcatatccttaacca 8053  T

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Target: scaffold0549 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 7358 - 7318
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaacca 56  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  7358 cattaactactatataatttcctttttcatatccttaacca 7318  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 50618 - 50567
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggag 67  Q
    |||||||||||||||||| | |||||||||||| ||||||| || |||||||    
T  50618 cattaactactatataatttcctttttcatatctttaaccagtgccccggag 50567  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 53462 - 53507
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtc 61  Q
    |||||||||||||||||| | |||||| ||||||||||||| ||||    
T  53462 cattaactactatataatttccttttttatatccttaaccagtgtc 53507  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 53801 - 53871
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttccc 85  Q
    |||||||||||||||||| | |||||||||| ||||||||| || ||| || ||||  |||||||||||||    
T  53801 cattaactactatataatttcctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 53871  T

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Target: scaffold1266 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 362 - 293
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtcccggagcactagttagcatttccc 85  Q
    ||||||||| |||||||| ||||||||||||| |||||||| || || || ||||  ||||| |||||||    
T  362 cattaactattatataattttctttttcatatgcttaaccagtgccctggggcaccggttaggatttccc 293  T

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Target: scaffold0264 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 23030 - 22961
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaaccaatg-tcccggagcactagttagcatttccc 85  Q
    ||||| ||||||||||| | |||||||||||||||||||| || ||| || ||||  |||||||||||||    
T  23030 attaattactatataatttcctttttcatatccttaaccagtgctccgggggcaccggttagcatttccc 22961  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 303 - 238
Alignment:
Q  195 gtttggatatgtaaaaattgaatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||| | ||||||||| | ||||||||||||||| | |||||||| |||||| |||| ||||||    
T  303 gtttggttttgtaaaaatgggatggaatggaatggagtgtgatggaacccattccatccaatacca 238  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 6226 - 6295
Alignment:
Q  16 cattaactactatataatcttctttttcatatccttaaccaatgtccc-ggagcactagttagcatttcc 84  Q
    |||||||||||||||| | | |||||||||||||||||||| || ||| || ||||  ||||||||||||    
T  6226 cattaactactatatagtttcctttttcatatccttaaccagtgccccaggggcaccggttagcatttcc 6295  T

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Target: scaffold0127 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 30230 - 30185
Alignment:
Q  215 aatggaatggaatggaatatgatggaatccattctatcctatacca 260  Q
    |||||||||||||||||| |||||||| |||||| ||| |||||||    
T  30230 aatggaatggaatggaatgtgatggaacccattccatcatatacca 30185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 69295 - 69258
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaac 54  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  69295 attaactactatataatttactttttcatatccttaac 69258  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 147022 - 147059
Alignment:
Q  17 attaactactatataatcttctttttcatatccttaac 54  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  147022 attaactactatataatttcctttttcatatccttaac 147059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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