View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_18 (Length: 374)

Name: NF11073_low_18
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_18
NF11073_low_18
[»] chr4 (2 HSPs)
chr4 (16-364)||(13615827-13616174)
chr4 (278-364)||(20297131-20297217)
[»] chr1 (2 HSPs)
chr1 (53-361)||(7582262-7582571)
chr1 (47-364)||(7098669-7098987)
[»] chr5 (7 HSPs)
chr5 (17-344)||(17982142-17982470)
chr5 (179-252)||(17418809-17418883)
chr5 (179-245)||(30243019-30243086)
chr5 (100-245)||(29871496-29871642)
chr5 (116-241)||(30399391-30399517)
chr5 (116-252)||(30714074-30714211)
chr5 (116-239)||(30748969-30749093)
[»] chr7 (1 HSPs)
chr7 (274-342)||(26706817-26706885)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 13615827 - 13616174
Alignment:
Q  16 tcaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcatgcaatccttaacttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13615827 tcaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcacgcaatccttaacttt 13615926  T
Q  116 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgaggtgaagca 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  13615927 aagagtaactaaattactatgagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgga-gaggtgaagca 13616025  T
Q  216 cttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccatgacaagaataattcatcgaggtctcttttatccattaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13616026 cttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccatgacaagaataattcatcgaggtcttttttatccattaa 13616125  T
Q  316 agtggcttcttgagcttcaaataaactacctatattttgtaagcctttg 364  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13616126 attggcttcttgagcttcaaataaactacctatattttgtaagcctttg 13616174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 20297217 - 20297131
Alignment:
Q  278 gacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatattttgtaagcctttg 364  Q
    |||||| |||||||||  |||||| ||||| |||| ||| ||||||||||||||||| ||| ||| || | || || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttg 20297131  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 53 - 361
Target Start/End: Complemental strand, 7582571 - 7582262
Alignment:
Q  53 ttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatccaactt 152  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||    
T  7582571 ttttagagatggtagtttaccaagtgatgaaaaccgttcacagtgcatgcaacccttaatttcaagagtaactaaattaccaagagttctgatccaactt 7582472  T
Q  153 gagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagcacttcaagtacttgatcatcactaataataggggtct 251  Q
    | ||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  7582471 gggaagcataaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtggtct 7582372  T
Q  252 tgacagatgaatctttgtgctgccatgacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatatt 351  Q
    | ||||||||||| ||||||  |||||||||| ||||||||||||||||| ||||| |||| ||  ||||||||||||||||| |||||||||| | |||    
T  7582371 taacagatgaatcattgtgcaaccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt 7582272  T
Q  352 ttgtaagcct 361  Q
    | ||||||||    
T  7582271 tggtaagcct 7582262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 47 - 364
Target Start/End: Original strand, 7098669 - 7098987
Alignment:
Q  47 gagttcttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatc 146  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||||  |||||     ||||| |||||||||||||||||||||||||||||||    
T  7098669 gagtttttttagatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatc 7098768  T
Q  147 caacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagcacttcaagtacttgatcatcactaataatag 245  Q
    |||||||  ||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||    
T  7098769 caacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacag 7098868  T
Q  246 gggtcttgacagatgaatctttgtgctgccatgacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacc 345  Q
    | |||||||||| || |||      || |||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||    
T  7098869 gagtcttgacaggtgtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactacc 7098968  T
Q  346 tatattttgtaagcctttg 364  Q
     | ||||||||||||||||    
T  7098969 aacattttgtaagcctttg 7098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 17982142 - 17982470
Alignment:
Q  17 caagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcatgcaatccttaacttta 116  Q
    ||||| |||||||||||| ||| |||  |  |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||    
T  17982142 caagtatttcacagacacattgaatagttcaagtttttttagagatggtagtttaccaagtgatgaaaaccgttcacaaagcatgcaatccttaacaata 17982241  T
Q  117 agagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagca 215  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |||||| | ||||| |||||||    
T  17982242 agagtaagtaaattgctaagagttctgatccaacttgggaagcataatccttggtaataatatattttcaagcccttaagatttctgtgaggttgaagca 17982341  T
Q  216 cttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccatgacaagaataattcatcgaggtctcttttatccattaa 315  Q
    |||||| |||  ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| | ||||||||| ||||||| ||||| | || ||    
T  17982342 cttcaaatacacgatcatcactaataataggggtcttgacagatgaaccttggtgccgccatgacaggcataattcattgaggtcttttttacctataaa 17982441  T
Q  316 agtggcttcttgagcttcaaataaactac 344  Q
    | | ||||||| | ||||| |||||||||    
T  17982442 atttgcttcttcaacttcagataaactac 17982470  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 17418883 - 17418809
Alignment:
Q  179 tattttcaagctcttgagatttgtatgaggt-gaagcacttcaagtacttgatcatcactaataataggggtctt 252  Q
    ||||||||||| |||||||||||  |||||| ||||||||||||||| ||| ||| |||||| ||||||||||||    
T  17418883 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagttgctcagcactaacaataggggtctt 17418809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 30243086 - 30243019
Alignment:
Q  179 tattttcaagctcttgagatttgtatgaggt-gaagcacttcaagtacttgatcatcactaataatag 245  Q
    ||||||||||| |||||||||||  |||||| ||||||||||||||||||| ||| ||||||| ||||    
T  30243086 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatag 30243019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 29871496 - 29871642
Alignment:
Q  100 tgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatt 199  Q
    ||||||||| || |||||||| || ||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||    
T  29871496 tgcaatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatt 29871595  T
Q  200 tgtatgagg-tgaagcacttcaagtacttgatcatcactaataatag 245  Q
    ||  ||||| |||||| |||| |||||||| ||| ||||||| ||||    
T  29871596 tgagtgaggttgaagctcttcgagtacttgctcagcactaattatag 29871642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 30399391 - 30399517
Alignment:
Q  116 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagc 214  Q
    ||||| |||||||||||||||| |  | ||||||||||  ||  ||||||| |  ||  ||| ||||||||||| |||||||||||  ||||| ||||||    
T  30399391 aagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagc 30399490  T
Q  215 acttcaagtacttgatcatcactaata 241  Q
    ||||| |||||||| | | ||||||||    
T  30399491 acttcgagtacttgctgagcactaata 30399517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 30714211 - 30714074
Alignment:
Q  116 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagc 214  Q
    ||||| |||||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  ||||| ||||||    
T  30714211 aagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagc 30714112  T
Q  215 acttcaagtacttgatcatcactaataataggggtctt 252  Q
     |||| |||||||| ||| |||||| || |||||||||    
T  30714111 tcttcgagtacttgctcagcactaacaacaggggtctt 30714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 30748969 - 30749093
Alignment:
Q  116 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgaggt-gaagc 214  Q
    ||||| || ||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||| |||||    
T  30748969 aagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagc 30749068  T
Q  215 acttcaagtacttgatcatcactaa 239  Q
    |||||||||||||| ||| ||||||    
T  30749069 acttcaagtacttgctcagcactaa 30749093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 26706817 - 26706885
Alignment:
Q  274 ccatgacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaact 342  Q
    |||||||||| ||||||  ||||||| | ||||  |||| ||| ||||||||||||||||| |||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaact 26706885  T

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