View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_19 (Length: 352)

Name: NF11073_low_19
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_19
NF11073_low_19
[»] chr1 (11 HSPs)
chr1 (21-335)||(6521636-6521951)
chr1 (21-217)||(6506903-6507099)
chr1 (21-200)||(6517220-6517399)
chr1 (21-199)||(6512822-6513000)
chr1 (108-225)||(47778041-47778158)
chr1 (128-225)||(47788183-47788280)
chr1 (286-335)||(6517084-6517133)
chr1 (21-193)||(47760133-47760299)
chr1 (128-221)||(47781969-47782062)
chr1 (116-193)||(6523733-6523810)
chr1 (286-335)||(6512685-6512734)
[»] scaffold0341 (2 HSPs)
scaffold0341 (21-217)||(928-1124)
scaffold0341 (21-217)||(8581-8778)
[»] chr7 (1 HSPs)
chr7 (24-169)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (22-142)||(28856512-28856632)
chr5 (90-140)||(28831318-28831368)
chr5 (22-142)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 6521636 - 6521951
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 6521835  T
Q  221 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaa-nnnnnnnnggatagtttaagaaataaagctgcatcaggggac 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||    
T  6521836 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac 6521935  T
Q  320 agtgaccttaaatatg 335  Q
    ||||||||||||||||    
T  6521936 agtgaccttaaatatg 6521951  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 217  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 200  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 6513000 - 6512822
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtct 199  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| |||||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtct 6512822  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 225
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  108 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 207  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  208 ttggacctgcttattttg 225  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  128 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 225  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 6517133 - 6517084
Alignment:
Q  286 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatg 335  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatg 6517084  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 193  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  128 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 221  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  116 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 193  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 6512734 - 6512685
Alignment:
Q  286 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatg 335  Q
    ||||| ||||||||||| |||| ||||||| || ||||||||||||||||    
T  6512734 ggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatg 6512685  T

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Target: scaffold0341 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 1124 - 928
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  121 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 217  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

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Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
Q  21 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 120  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  121 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 217  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  24 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 123  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  124 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 169  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  22 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 121  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  122 aaaccgaaaagaagcaattgg 142  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  90 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 140  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  22 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 121  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  122 aaaccgaaaagaagcaattgg 142  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

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