View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_2 (Length: 889)

Name: NF11073_low_2
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_2
NF11073_low_2
[»] chr3 (45 HSPs)
chr3 (2-881)||(46236273-46237151)
chr3 (75-602)||(5160119-5160640)
chr3 (83-617)||(46479642-46480168)
chr3 (83-618)||(5156097-5156627)
chr3 (89-525)||(46473787-46474220)
chr3 (157-523)||(46483974-46484337)
chr3 (86-605)||(46497800-46498314)
chr3 (75-525)||(45883567-45884016)
chr3 (157-326)||(51943816-51943985)
chr3 (90-523)||(46490568-46490998)
chr3 (159-386)||(45902882-45903109)
chr3 (276-615)||(47397057-47397388)
chr3 (220-386)||(47414163-47414329)
chr3 (75-525)||(46526259-46526706)
chr3 (407-624)||(16025657-16025869)
chr3 (83-326)||(46549017-46549260)
chr3 (430-602)||(51944086-51944256)
chr3 (2-62)||(54140938-54140998)
chr3 (2-73)||(357835-357905)
chr3 (407-525)||(46539170-46539288)
chr3 (2-63)||(24748954-24749015)
chr3 (421-519)||(46554024-46554122)
chr3 (2-63)||(10769769-10769830)
chr3 (2-63)||(37600174-37600235)
chr3 (687-764)||(47413795-47413872)
chr3 (4-63)||(29775184-29775243)
chr3 (571-617)||(46484372-46484418)
chr3 (232-326)||(46531920-46532014)
chr3 (6-63)||(38928053-38928110)
chr3 (2-63)||(50661566-50661627)
chr3 (687-771)||(46480239-46480323)
chr3 (468-597)||(46544706-46544830)
chr3 (571-618)||(46474255-46474302)
chr3 (470-521)||(46532155-46532206)
chr3 (666-775)||(16025902-16026012)
chr3 (568-625)||(46532236-46532293)
chr3 (565-617)||(45883483-45883535)
chr3 (703-775)||(46474385-46474457)
chr3 (708-775)||(46498415-46498482)
chr3 (687-754)||(51944336-51944403)
chr3 (676-757)||(5156679-5156761)
chr3 (277-367)||(46554173-46554263)
chr3 (2-35)||(27243120-27243153)
chr3 (2-63)||(43657040-43657101)
chr3 (83-136)||(51942982-51943035)
[»] chr8 (16 HSPs)
chr8 (220-615)||(9692467-9692854)
chr8 (220-615)||(9675445-9675832)
chr8 (683-779)||(9675292-9675388)
chr8 (683-779)||(9692314-9692410)
chr8 (2-63)||(23142859-23142920)
chr8 (2-63)||(33417757-33417818)
chr8 (5-73)||(7599457-7599524)
chr8 (4-48)||(43026368-43026412)
chr8 (410-602)||(21463952-21464139)
chr8 (2-64)||(28211929-28211991)
chr8 (2-63)||(902417-902478)
chr8 (2-63)||(1205902-1205963)
chr8 (2-73)||(35689555-35689625)
chr8 (2-63)||(12212169-12212230)
chr8 (2-63)||(12456597-12456658)
chr8 (2-63)||(34303482-34303543)
[»] chr4 (17 HSPs)
chr4 (220-605)||(35162428-35162804)
chr4 (221-525)||(35155408-35155709)
chr4 (75-373)||(15555856-15556154)
chr4 (2-63)||(16178658-16178719)
chr4 (410-525)||(15556188-15556303)
chr4 (5-63)||(51206121-51206179)
chr4 (2-51)||(13070015-13070064)
chr4 (2-63)||(44832538-44832599)
chr4 (3-63)||(41278662-41278722)
chr4 (684-754)||(35155852-35155922)
chr4 (684-754)||(35162872-35162942)
chr4 (697-758)||(15556465-15556526)
chr4 (2-63)||(37315635-37315696)
chr4 (2-37)||(25719183-25719218)
chr4 (2-63)||(30866976-30867037)
chr4 (2-51)||(39016738-39016787)
chr4 (2-63)||(47237785-47237846)
[»] chr2 (15 HSPs)
chr2 (84-525)||(20144470-20144920)
chr2 (407-529)||(20168850-20168972)
chr2 (407-529)||(20359312-20359434)
chr2 (2-63)||(42182964-42183025)
chr2 (2-63)||(28898081-28898142)
chr2 (2-63)||(1110273-1110334)
chr2 (220-373)||(20359116-20359269)
chr2 (2-73)||(37228574-37228644)
chr2 (221-326)||(20169062-20169167)
chr2 (4-63)||(31395489-31395548)
chr2 (2-73)||(33746955-33747025)
chr2 (2-63)||(4964717-4964778)
chr2 (2-63)||(6315733-6315794)
chr2 (2-59)||(15508989-15509046)
chr2 (2-63)||(37719881-37719942)
[»] chr7 (19 HSPs)
chr7 (232-525)||(17708274-17708564)
chr7 (232-454)||(17718098-17718317)
chr7 (236-454)||(16722155-16722370)
chr7 (236-454)||(17699169-17699384)
chr7 (2-63)||(45909531-45909592)
chr7 (2-62)||(13919855-13919915)
chr7 (3-63)||(19840929-19840989)
chr7 (2-73)||(17354562-17354632)
chr7 (2-53)||(22786226-22786277)
chr7 (2-63)||(19494383-19494444)
chr7 (2-63)||(25428523-25428584)
chr7 (2-63)||(26703484-26703545)
chr7 (2-63)||(14759718-14759779)
chr7 (2-63)||(21963174-21963235)
chr7 (232-454)||(17735928-17736147)
chr7 (4-63)||(31959860-31959919)
chr7 (236-326)||(17745113-17745202)
chr7 (2-72)||(26459068-26459137)
chr7 (2-63)||(25980824-25980885)
[»] chr5 (9 HSPs)
chr5 (2-63)||(42224635-42224696)
chr5 (2-63)||(24915130-24915191)
chr5 (2-63)||(17568746-17568807)
chr5 (2-63)||(24990961-24991022)
chr5 (2-63)||(13456209-13456270)
chr5 (2-73)||(34818261-34818331)
chr5 (2-65)||(40971495-40971558)
chr5 (2-63)||(868211-868272)
chr5 (2-63)||(26072178-26072239)
[»] chr1 (12 HSPs)
chr1 (2-63)||(11135814-11135875)
chr1 (2-53)||(14094055-14094106)
chr1 (2-73)||(29418556-29418627)
chr1 (2-63)||(11430516-11430576)
chr1 (2-63)||(50773155-50773216)
chr1 (10-73)||(13388372-13388434)
chr1 (2-63)||(24436511-24436572)
chr1 (2-63)||(32848627-32848688)
chr1 (12-73)||(41095644-41095704)
chr1 (2-63)||(41918070-41918131)
chr1 (2-72)||(28109943-28110011)
chr1 (6-52)||(43832348-43832394)
[»] chr6 (7 HSPs)
chr6 (2-63)||(19090259-19090320)
chr6 (2-63)||(35128767-35128828)
chr6 (4-73)||(10060936-10061004)
chr6 (2-63)||(12794858-12794919)
chr6 (5-63)||(19737479-19737537)
chr6 (5-65)||(373477-373537)
chr6 (2-51)||(6992327-6992376)
[»] scaffold0054 (1 HSPs)
scaffold0054 (3-63)||(30957-31017)


Alignment Details
Target: chr3 (Bit Score: 742; Significance: 0; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 2 - 881
Target Start/End: Complemental strand, 46237151 - 46236273
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtggtaaccaaactcatatttgcaaatgcaa 101  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46237151 caccactttatgtgggttccatttctaaaatgtaggtcctacattgatttcatccaataaaataggtgagtggtaaccaaactcatatttgcaaatgcaa 46237052  T
Q  102 tgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagctccgtcaaagttcccttcat 201  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  46237051 tgtactttaaaggaatatggaatgagaagtttgatacttcggtaacgaaagacagtgactgttaccttttaaatggtagctccgtcaaagttcccttcat 46236952  T
Q  202 gacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtat 301  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46236951 gacctcctataagaaacggtatattggagattttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtat 46236852  T
Q  302 atttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaag 401  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46236851 atttttcttccagatgcaaaagatgggttgtcaaccttggttgagaagctggcttctgaatttgagttaccagaacacaatcttcctctcattaaaaaag 46236752  T
Q  402 tggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46236751 tggcggtaggtgagttcaagattccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgc 46236652  T
Q  502 tggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaag 601  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  46236651 tggaggttttacaaaaattgtggattcttcttttgagggtgaaaacctatatgtttccaacata--tttcacaaatctttcattgaagtaaatgaagaag 46236554  T
Q  602 gcactcaagttgctgcattcactacttat-nnnnnnngcaaagtacacagaaagagttgtatacatcgagaagattttgtagc-gatcacccttttctat 699  Q
    ||||| |||||||||||||||||||||||        ||||||||||||||||||  ||||||||||||||||| |||||||| ||||||||||| ||||    
T  46236553 gcactgaagttgctgcattcactacttataaaaaaaagcaaagtacacagaaagaaatgtatacatcgagaagactttgtagctgatcaccctttcctat 46236454  T
Q  700 ttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatcttaacttgtcatacaccaaattaataa 799  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46236453 ttctaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatcttaacttgtcatacacc-aattaataa 46236355  T
Q  800 acattaatctgacaaacttataaaaatatatggtgtcggtctctatttagacttgcaagcttaaacttcttcggttcttctc 881  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46236354 gcattaatctgacaaacttataaaaatatatggtgtcggtctctatttagacttgcaagcttaaacttcttcggttcttctc 46236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 75 - 602
Target Start/End: Original strand, 5160119 - 5160640
Alignment:
Q  75 taaccaaactcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaa 174  Q
    |||||| |||||| ||||| |||||| | |||||||||||| |||||| ||| |||||||||  ||||  ||||||||||  ||||||| ||||||| ||    
T  5160119 taaccagactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgattttcaccttttgaa 5160218  T
Q  175 tggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggc 274  Q
    ||| ||||| ||||| |||||||||||||||  | |  |||| | |||||||| || || ||| |  ||||||||||||  |||||| |||||  |||||    
T  5160219 tgg-agctcagtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatgacgactttaaagttcttcgtcttccgtataagaaaggc 5160317  T
Q  275 aaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactag 374  Q
    |||||| |||||| |||||||||||| ||||| |||||| ||||||||||||   |||| || |||||| ||||| |||||||||||| ||||||||||     
T  5160318 aaagataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagttactac 5160417  T
Q  375 aacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaagga 474  Q
    | ||||   ||| |||   | || |||  |   ||||||| ||||  |||||||||||||| ||||| |||| | |||||||| || ||| | |||||||    
T  5160418 accacaggtttcatcttcctgaagaagaag---taggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaagga 5160514  T
Q  475 gttaggagtgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcaca 574  Q
    ||||||||||| |||||||||| ||  || |||||| |||||||||||||| |||||| ||| |||||| | ||| |  ||||| || |||  |||||||    
T  5160515 gttaggagtgactttacctttcactcgtgaaggtttgacaaaaatggtggactcttctcttgtgggtgatagcctttcagtttctaaaata--tttcaca 5160612  T
Q  575 aatctttcattgaagtaaatgaagaagg 602  Q
    ||||||||||||||||||||||||||||    
T  5160613 aatctttcattgaagtaaatgaagaagg 5160640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 83 - 617
Target Start/End: Original strand, 46479642 - 46480168
Alignment:
Q  83 ctcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagct 182  Q
    ||||| ||||| |||||| | ||||| |||||| | |||||||| ||||||||| ||||   |||| |||||   || ||| ||||||| |||||||||     
T  46479642 ctcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagcc 46479741  T
Q  183 ccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatga 282  Q
    | ||||| |||||||||||||||  | | ||||| | ||||||| ||| |||||||||||||||||||||   |||||||||||| |||||| ||||| |    
T  46479742 cagtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataa 46479841  T
Q  283 gcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaat 382  Q
    |||||||||| | |||||  ||||||||||| |||||||||||| | || || | ||||| || ||| |||||||||||| |||| ||||  |||||||     
T  46479842 gcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctgaatctgagctactgcaacacaag 46479941  T
Q  383 cttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggag 482  Q
    |||||     ||   |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||| || ||| | | |||||| |||| |    
T  46479942 cttcc---atttggtaaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaacttctgatatgctaaaggagctaggtg 46480038  T
Q  483 tgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttc 582  Q
    || ||||||||||||||| ||||||| | ||||| |||||| | |||||  ||    || ||||||| | ||||||||  |||| |||||||| ||||||    
T  46480039 tggttttacctttctctggtggaggtctgacaaagatggtgaactcttcagtt---agtcaaaacctttgtgtttcca--atatatttcacaagtctttc 46480133  T
Q  583 attgaagtaaatgaagaaggcactcaagttgctgc 617  Q
    |||||||||||||||||||||||| ||| ||||||    
T  46480134 attgaagtaaatgaagaaggcactgaagctgctgc 46480168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 83 - 618
Target Start/End: Original strand, 5156097 - 5156627
Alignment:
Q  83 ctcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagct 182  Q
    ||||| ||||| |||||| | |||||||||||| |||||| |||||||||||||  || |  ||||||||||  ||||||| ||||||| ||||| ||||    
T  5156097 ctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagct 5156196  T
Q  183 ccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatga 282  Q
    | ||||| |||||||||||||||  | |  |||| | |||||||| || || || ||| ||||||||||||  |||||| |||||  ||||||||||| |    
T  5156197 cggtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatggtggctttaaagttcttcgtcttccgtataaaaaaggcaaagataa 5156296  T
Q  283 gcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaat 382  Q
    ||||| |||||||||||| |||||||||||| |||| |||||||  ||| || | |||||||||||| ||||| || ||  | | |||||| |  | | |    
T  5156297 gcgtcgattctctatgtacatttttcttccaaatgctaaagatggactgccagcattggttgagaagttggctgctaaacctcacttactacactatagt 5156396  T
Q  383 cttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggag 482  Q
    |||| ||    |    |||  |  |||| ||| ||||  |||||||||||||| ||||| |||| | |||||||| |  ||| | | || ||| ||||||    
T  5156397 cttcatc---ctgctgaagcagaagtagttgaattcagaattccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggag 5156493  T
Q  483 tgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttc 582  Q
    |||||||||||||| ||  ||||||||| |||||||||||||| ||| || ||| |||  | | ||| | |||||| || |||  |||||||||||||||    
T  5156494 tgattttacctttcactcgtggaggtttgacaaaaatggtggactctcctcttgtgggcaatagcctttctgtttctaaaata--tttcacaaatctttc 5156591  T
Q  583 attgaagtaaatgaagaaggcactcaagttgctgca 618  Q
    |||||||||||||||||||||||| ||| |||||||    
T  5156592 attgaagtaaatgaagaaggcactgaagctgctgca 5156627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 89 - 525
Target Start/End: Original strand, 46473787 - 46474220
Alignment:
Q  89 tttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagctccgtca 188  Q
    ||||| |||||| |||| ||||||||| |||||||| ||||| ||||| ||||   ||| ||||||  ||||||||||||| | ||||| ||||| || |    
T  46473787 tttgctaatgcattgtattttaaaggatcatggaatcagaagattgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagtta 46473886  T
Q  189 aagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtca 288  Q
    | ||| |||| |||||   | | ||||| | ||||||| ||| ||||||||||||||||||||||  |||||||||||| |||||| ||||| ||||||     
T  46473887 aggtttcctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcg 46473986  T
Q  289 attctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcct 388  Q
     ||| |||||||  ||||||||||| |||||||||||| |||  |||  |||||||| ||| |||||||||||| ||| |||||| ||||||| ||||||    
T  46473987 tttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctgaatctgatttactacaacacaagcttcct 46474086  T
Q  389 ctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattt 488  Q
        || | |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||| |  ||| | | |||||| |||| ||| |||    
T  46474087 ---tttgataaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaacttccgatatgctaaaggagctaggtgtggttt 46474183  T
Q  489 tacctttctctgctggaggttttacaaaaatggtgga 525  Q
    |||||||||||| || |||  | ||||||||||||||    
T  46474184 tacctttctctggtgaagggctgacaaaaatggtgga 46474220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 157 - 523
Target Start/End: Original strand, 46483974 - 46484337
Alignment:
Q  157 tgatttttaccttttaaatggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttat 256  Q
    ||||||| ||||| | ||||| ||||| ||||| |||||||| |||||   | | ||||| | ||||||| ||| ||||||||||||||||||||||  |    
T  46483974 tgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggt 46484073  T
Q  257 cttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggctt 356  Q
    ||||||||||| |||||| ||||| ||||||  ||| |||||||  ||||||||||| |||||||||||| |||  |||  |||||||| ||| ||||||    
T  46484074 cttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggctt 46484173  T
Q  357 ctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaac 456  Q
    |||||||||| |||||| ||||||| ||||||    || | |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||    
T  46484174 ctgaatttgatttactacaacacaagcttcct---tttgataaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaac 46484270  T
Q  457 tactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaatggtg 523  Q
    | ||  || | | |||||| |||| ||| ||||||||||||||| ||||||| | ||||| ||||||    
T  46484271 ttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtg 46484337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 86 - 605
Target Start/End: Original strand, 46497800 - 46498314
Alignment:
Q  86 atatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagctccg 185  Q
    |||||||| |||||| | ||||||||||||   |||||||| || |||||| |||||| |||||| | |  ||||||| ||||||| ||||| | ||| |    
T  46497800 atatttgctaatgcactatactttaaaggagagtggaatgataattttgatgcttcggaaacgaatgtctatgattttcaccttttgaatggaaactcag 46497899  T
Q  186 tcaaagttcccttcatgacctcctat---aagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatga 282  Q
    | || |||  |||||||||     ||   ||||| | ||||||| ||||||| |||| |||||||||||||   ||||||||||| |||||| ||||  |    
T  46497900 ttaaggttgacttcatgactagtgatgagaagaagcagtttattagagatttcgatgattttaaagttcttggccttccttataagcaaggcgaagacaa 46497999  T
Q  283 gcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaat 382  Q
    |||||||||  | |||||  ||||||||||| |||||||||||| |||| |||| ||| |||||||||| ||||| |||| |||||||||  |||||||     
T  46498000 gcgtcaatttacgatgtacttttttcttccaaatgcaaaagatgggctgccaactttgcttgagaagcttgcttccgaatctgagttactgcaacacaag 46498099  T
Q  383 cttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggag 482  Q
    |||||||   || | |||||||  |||||||| || | ||||||||| ||||||||||| ||||   |||||||| || ||| | | |||||| | || |    
T  46498100 cttcctc---ttgacaaagtggaagtaggtgactttaggattccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcg 46498196  T
Q  483 tgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttc 582  Q
    || |||| |||||| ||  ||||||||| || ||||||||| | ||| |   || | || ||||||| ||||||||||| |||  || ||||| ||||||    
T  46498197 tggttttgcctttcactaatggaggtttgactaaaatggtgaactctgc---tgtgagtcaaaacctttatgtttccaaaata--ttccacaagtctttc 46498291  T
Q  583 attgaagtaaatgaagaaggcac 605  Q
    |||||||||||||||||||||||    
T  46498292 attgaagtaaatgaagaaggcac 46498314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 75 - 525
Target Start/End: Complemental strand, 45884016 - 45883567
Alignment:
Q  75 taaccaaactcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaa 174  Q
    |||||| |||||||||||| |||||| |||||||||| ||| |||||||| |   ||||||| |||||  ||| ||| ||   |||||| |  ||   ||    
T  45884016 taaccagactcatatttgctaatgcattgtactttaagggagcatggaatcaaccgtttgatccttcgaaaacaaaatactacgattttcatattcataa 45883917  T
Q  175 tggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggc 274  Q
    |||||| || |||||||||||||||||||||  | | ||  | |  |||||| ||| |||||||||||||||||| |||| | | |||||| | |||||     
T  45883916 tggtagttcagtcaaagttcccttcatgaccagcaagaaagatcaatttattagagcttttgatggttttaaagtgctttgtatcccttatgagcaaggt 45883817  T
Q  275 aaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactag 374  Q
      |||| |||||| ||||||||||||  ||||||||||| ||||||||||||  |||||| | ||||| |||||| |||||||||||| |   ||||||     
T  45883816 ggagataagcgtcgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaatctacattactac 45883717  T
Q  375 aacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaagga 474  Q
    | |||||      | |||||  ||| ||    |||||||| ||||  ||||||||||||||| |||| |||||| |||||||| |||||| | |||||||    
T  45883716 accacaaaagctttgtcattctaaa-gtcaaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaagga 45883618  T
Q  475 gttaggagtgattttacctttctctgctggaggttttacaaaaatggtgga 525  Q
    |||||||||| ||| ||||||||||  |||| |||| ||||||||||||||    
T  45883617 gttaggagtggtttcacctttctctcgtggaagtttgacaaaaatggtgga 45883567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 51943816 - 51943985
Alignment:
Q  157 tgatttttaccttttaaatggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttat 256  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||||||||  | ||||||| | |||||||| || || ||||| ||||||||||||| ||    
T  51943816 tgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaataagaagcagtttattgaagtttatgatgattttaaagttcttcat 51943915  T
Q  257 cttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatg 326  Q
    |||||||||||  ||||  ||||| |||| ||||||||||||||| ||||||||||| ||||||||||||    
T  51943916 cttccttataagaaaggtgaagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatg 51943985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 90 - 523
Target Start/End: Original strand, 46490568 - 46490998
Alignment:
Q  90 ttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagctccgtcaa 189  Q
    |||| |||||| | ||||| ||||||   |||||||| ||||||||| ||||   ||||||||||  ||||||| ||||||| ||||| |||||  | ||    
T  46490568 ttgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaagactatgattttcaccttttgaatggcagctcaattaa 46490667  T
Q  190 agttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaa 289  Q
     ||||||||||||||   | |  |  |||  | |||| ||| ||| |||| |||||||||||||   ||||||||||| |||||| ||||| ||||| ||    
T  46490668 ggttcccttcatgactagcaaggaagaacaatatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtgaa 46490767  T
Q  290 ttctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctc 389  Q
    ||  |||||||  ||||||||||| |||||||||||| |||| |||| ||| |||||||| ||||||||||||  |||| |||| ||||||| ||||       
T  46490768 tttactatgtacttttttcttccaaatgcaaaagatgggctgccaactttgcttgagaagttggcttctgaatcggagtcactaaaacacaagcttc--- 46490864  T
Q  390 tcat-taaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattt 488  Q
     ||| | | | ||||| ||||||||| || | ||| ||||| ||||||||||| |||||  |||||||| || ||| | |||||||| | || ||| |||    
T  46490865 -catatgatagagtggaggtaggtgactttaggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttt 46490963  T
Q  489 tacctttctctgctggaggttttacaaaaatggtg 523  Q
    |||||||| |   ||||||| |||| |||||||||    
T  46490964 tacctttcaccaatggaggtcttactaaaatggtg 46490998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 159 - 386
Target Start/End: Original strand, 45902882 - 45903109
Alignment:
Q  159 atttttaccttttaaatggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatct 258  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||  | | ||||  | ||||||  | | ||| |||||||| ||||| |||  |||    
T  45902882 atttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtacttcgtct 45902981  T
Q  259 tccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttct 358  Q
    ||||||| | |||||  ||||| |||||||||||||||||||||||||||||||| | ||||||||||   ||  ||  || ||||||||| | ||||||    
T  45902982 tccttatgagcaaggagaagataagcgtcaattctctatgtatatttttcttccaaaagcaaaagatggtttgcaaagtttagttgagaaggtagcttct 45903081  T
Q  359 gaatttgagttactagaacacaatcttc 386  Q
    |||| |||||||||| | ||||| ||||    
T  45903082 gaatctgagttactacaccacaagcttc 45903109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 276 - 615
Target Start/End: Complemental strand, 47397388 - 47397057
Alignment:
Q  276 aagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactaga 375  Q
    ||||| |||| || ||||| ||||| |||||||||||| ||||||||||||   || ||   |||||||||||  |||||||| ||||||||||||||||    
T  47397388 aagataagcgccatttctccatgtacatttttcttccaaatgcaaaagatggattgacagatttggttgagaacatggcttctaaatttgagttactaga 47397289  T
Q  376 acacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggag 475  Q
    ||||||||||||  | ||| ||||   |   ||  |  | ||||| ||||||||||||||  ||||  || || |||||||| || ||| | ||||||||    
T  47397288 acacaatcttccagttattcaaaa---gaaagtgagaaacttcaaaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggag 47397192  T
Q  476 ttaggagtgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaa 575  Q
    |||||||||||||||||||||||    |||||||| ||||||||| ||||  ||| | | | |||| ||||||| | |||||||||||||  ||||| ||    
T  47397191 ttaggagtgattttacctttctccctcggaggtttaacaaaaatgatgga--ctt-tctagcgggtcaaaacctttttgtttccaacata--tttcagaa 47397097  T
Q  576 atctttcattgaagtaaatgaagaaggcactcaagttgct 615  Q
     | ||||||||||||||||||  |||||||| ||||||||    
T  47397096 gtatttcattgaagtaaatgagaaaggcactaaagttgct 47397057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 220 - 386
Target Start/End: Complemental strand, 47414329 - 47414163
Alignment:
Q  220 gtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgca 319  Q
    ||||||||||| |||||||| ||||||||||||||  |||||||||||| ||||  |||||  |||  ||||||||||||| |||||||||||| |  ||    
T  47414329 gtttattggagcttttgatgattttaaagttctttgccttccttataataaaggagaagatacgcggaaattctctatgtacatttttcttccaaacaca 47414230  T
Q  320 aaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttc 386  Q
    | |||||  |||||| | |||||||||||| |||||||||||| |||||||||| | ||||| ||||    
T  47414229 agagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 47414163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 75 - 525
Target Start/End: Complemental strand, 46526706 - 46526259
Alignment:
Q  75 taaccaaactcatatttgcaaatgcaatgtacttt-aaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaa 173  Q
    |||||| |||||| |||||||| ||| |||| ||| |||||| |||||||  ||||||||  | |||||  ||| ||| ||  ||||||| |||||| ||    
T  46526706 taaccagactcatctttgcaaacgcactgtatttttaaaggagcatggaaaaagaagtttcctgcttcgagaacaaaaaactatgattttcaccttt-aa 46526608  T
Q  174 atggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaagg 273  Q
    |||| ||||| ||||| |||||||||||||||  | | || | ||  |||||  | | ||| |||||||| ||||| ||   |||||||||||| |||||    
T  46526607 atggcagctcagtcaaggttcccttcatgaccagcgagaatagacaatttatcagtgttttcgatggtttcaaagtactccgtcttccttataagcaagg 46526508  T
Q  274 caaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttacta 373  Q
      ||||| ||||||||||||||||||| ||||||||||||   |||| |||||   || |||| ||  | |||||| | |||||||||  ||||||||||    
T  46526507 agaagataagcgtcaattctctatgtacatttttcttccaagagcaagagatggtttgccaactttaatcgagaaggtagcttctgaacctgagttacta 46526408  T
Q  374 gaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaagg 473  Q
     | ||||| |||||| ||   | |||||| |  |||||||| ||||  ||||||| ||||||  |||| |||| | |||| ||| || | | | |||| |    
T  46526407 caccacaaccttcctttc---acaaaagttgaagtaggtgatttcagaattccaaaattcaaattttcatttgagcttgacacttctcaaatgttgaaag 46526311  T
Q  474 agttaggagtgattttacctttctctgctggaggttttacaaaaatggtgga 525  Q
    |||||| |||||||||||||||||||  ||| ||||| ||||| || |||||    
T  46526310 agttagaagtgattttacctttctcttgtgggggtttgacaaatattgtgga 46526259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 407 - 624
Target Start/End: Original strand, 16025657 - 16025869
Alignment:
Q  407 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggag 506  Q
    |||||||| ||||  |||||||| |||||  |||| |||||| |||||||| || ||| | |||||||| | |||||  |||||||||||||| ||||||    
T  16025657 gtaggtgatttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctggag 16025756  T
Q  507 gttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaaggcact 606  Q
    |||| ||||||||||||||  ||| | ||||   | || |||| | ||||||   ||||  ||||||||||||||||| ||||||||||||||||| |||    
T  16025757 gtttgacaaaaatggtgga--ctt-tcttgaacatcaagacctctttgtttctcgcata--tttcacaaatctttcatcgaagtaaatgaagaaggaact 16025851  T
Q  607 caagttgctgcattcact 624  Q
     ||||||||||| |||||    
T  16025852 gaagttgctgcagtcact 16025869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 326
Target Start/End: Complemental strand, 46549260 - 46549017
Alignment:
Q  83 ctcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagct 182  Q
    ||||| |||||||||||| | ||||| |||||| ||||| ||||||||||| |||||  ||  | | |||    ||||||| ||||| | ||||| ||||    
T  46549260 ctcatctttgcaaatgcattatacttcaaaggagcatgggatgagaagtttaatactatggacatggaaggatatgattttcaccttctcaatggcagct 46549161  T
Q  183 ccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatga 282  Q
    | ||||| ||||||||||| |||  |   ||  | | ||||||  | | |||||||||||| |||||||||||||||||||||||  |||| |||||| |    
T  46549160 cggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatggtttcaaagttctttatcttccttataaataaggaaaagataa 46549061  T
Q  283 gcgtcaattctctatgtatatttttcttccagatgcaaaagatg 326  Q
     || ||||||||||||||  ||||||||||| || |||||||||    
T  46549060 acgacaattctctatgtacttttttcttccaaatacaaaagatg 46549017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 430 - 602
Target Start/End: Original strand, 51944086 - 51944256
Alignment:
Q  430 attcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaatggtggattct 529  Q
    |||||||||||| |||| | ||||| |||||  || | | ||| || |||||||| |||||||||||||  ||||||||||||||||||||||||| |||    
T  51944086 attcaatatttcatttgagcttgaagctactcgtatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaatggtggactct 51944185  T
Q  530 tcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaagg 602  Q
    ||| ||  |||| | |  || | |||    ||||||  |||||||||||||||||||||||||||||||||||    
T  51944186 tctcttatgggtaagatactttctgtaagtaacata--tttcacaaatctttcattgaagtaaatgaagaagg 51944256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 54140998 - 54140938
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaa 62  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  54140998 caccactttacgtgggttccattttcaaagtgtaggttctacattgatttcatccaataaa 54140938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 357835 - 357905
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    ||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||| |||||||||    
T  357835 caccactttatgtgggttccatttccaaagtgtagtacctacattgatttcatccaataaaa-aagtgagtg 357905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 525
Target Start/End: Original strand, 46539170 - 46539288
Alignment:
Q  407 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggag 506  Q
    |||||||| ||||  |||||||||||||| ||||| |||| | |||||||| |||||| | | |||||| ||||| || ||||||||||||||   ||||    
T  46539170 gtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggag 46539269  T
Q  507 gttttacaaaaatggtgga 525  Q
    |||| ||||||||||||||    
T  46539270 gtttgacaaaaatggtgga 46539288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 24749015 - 24748954
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  24749015 caccattttatgtgggttccatttctaaagtgtaggtcctacattgatttcatccaataaaa 24748954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 421 - 519
Target Start/End: Complemental strand, 46554122 - 46554024
Alignment:
Q  421 gattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaat 519  Q
    ||||||||| ||| | ||||| |||||| |||||  | |||||| | |||||||||| |||||||||||||||||||||  ||||||||| ||||||||    
T  46554122 gattccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaat 46554024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 10769830 - 10769769
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||| |||||||    
T  10769830 caccactttatatgggttccatttctaaagtgtaggtcctacattgatttcatcaaataaaa 10769769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 37600235 - 37600174
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||| |||| |||||||||    
T  37600235 caccactttatgtgggttccatttctaaagtgtaggtcctacattgaattcaaccaataaaa 37600174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 764
Target Start/End: Complemental strand, 47413872 - 47413795
Alignment:
Q  687 cacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgtt 764  Q
    ||||||||  ||||| |||||||||||| ||| |||| |||||||||||||| |||||| |||||||||||| |||||    
T  47413872 caccctttcttatttctaattagagaagattcaaccgaaacaatcctctttgttggacatgtgctcaatcctcttgtt 47413795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 29775243 - 29775184
Alignment:
Q  4 ccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||| |||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||    
T  29775243 ccacattatgtgggttccatttccaaagtgtaggtcctaccttgatttcacccaataaaa 29775184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 617
Target Start/End: Original strand, 46484372 - 46484418
Alignment:
Q  571 cacaaatctttcattgaagtaaatgaagaaggcactcaagttgctgc 617  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  46484372 cacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgc 46484418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 46531920 - 46532014
Alignment:
Q  232 ttttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatg 326  Q
    |||||||||||||||  | |||  |||||||||||| |||||||| |||   |||||||||||||||||  |||||||||| |||||| ||||||    
T  46531920 ttttgatggttttaagatccttcgtcttccttataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcccgatgcacaagatg 46532014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 38928110 - 38928053
Alignment:
Q  6 actttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||| ||||||||||||||||| |||||||  ||||||||||||| |||||||||    
T  38928110 actttatatgggttccatttccaaagtgtaggtcttacattgatttcacccaataaaa 38928053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 50661627 - 50661566
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||||||||||||| |  | |||||||||| | |||||||||    
T  50661627 caccactttatgtgggttccatttccaaaatgtatgacccacattgatttaacccaataaaa 50661566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 771
Target Start/End: Original strand, 46480239 - 46480323
Alignment:
Q  687 cacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgat 771  Q
    ||||||||  ||||| | ||||||||||  | ||||||||||||| |||||| ||||||||||||||||||| ||| ||| ||||    
T  46480239 caccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat 46480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 597
Target Start/End: Original strand, 46544706 - 46544830
Alignment:
Q  468 tgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatt 567  Q
    |||||||| |||||||| |||||||||||||| | |||||||| ||||| |||||||| ||| || |   || | |||||||  || |||||||||||      
T  46544706 tgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctcctat---ggatcaaaaccttcatatttccaacata-- 46544800  T
Q  568 tttcacaaatctttcattgaagtaaatgaa 597  Q
    || ||||| ||||| |||||||||||||||    
T  46544801 ttccacaagtcttttattgaagtaaatgaa 46544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 571 - 618
Target Start/End: Original strand, 46474255 - 46474302
Alignment:
Q  571 cacaaatctttcattgaagtaaatgaagaaggcactcaagttgctgca 618  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  46474255 cacaaatatttcattgaagtaaatgaagaaggcactgaagctgctgca 46474302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 46532155 - 46532206
Alignment:
Q  470 aaggagttaggagtgattttacctttctctgctggaggttttacaaaaatgg 521  Q
    ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||    
T  46532155 aaggagttaggagttgttttacctttctctggtggaggtttgacaaaaatgg 46532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 666 - 775
Target Start/End: Original strand, 16025902 - 16026012
Alignment:
Q  666 tcgagaagattttgtagc-gatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgtt 764  Q
    ||||| |||||||||||| || ||||||||  ||||| |||||||||||| ||  |||| ||||||||||||||  || || || ||||||||| |||||    
T  16025902 tcgagtagattttgtagctgaccaccctttcttatttctaattagagaagatttaaccgaaacaatcctctttgtagggcaagtactcaatccttttgtt 16026001  T
Q  765 ggatgatctta 775  Q
    |  ||||||||    
T  16026002 gagtgatctta 16026012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 46532236 - 46532293
Alignment:
Q  568 tttcacaaatctttcattgaagtaaatgaagaaggcactcaagttgctgcattcacta 625  Q
    ||||| || ||||||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  46532236 tttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgcagtcacta 46532293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 617
Target Start/End: Complemental strand, 45883535 - 45883483
Alignment:
Q  565 atttttcacaaatctttcattgaagtaaatgaagaaggcactcaagttgctgc 617  Q
    ||||||||| | |||||||||||||| ||||||||||||||| ||| ||||||    
T  45883535 atttttcactagtctttcattgaagttaatgaagaaggcactgaagctgctgc 45883483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 703 - 775
Target Start/End: Original strand, 46474385 - 46474457
Alignment:
Q  703 taattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatctta 775  Q
    |||||||||| | || | ||||||||||| |||||| |||||||||||| |||||| ||| ||| ||||||||    
T  46474385 taattagagatgatttggccggaacaatcatctttgttggacaggtgcttaatcctcttgatgggtgatctta 46474457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 775
Target Start/End: Original strand, 46498415 - 46498482
Alignment:
Q  708 agagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatctta 775  Q
    ||||||| || ||||||||| ||| |||||| ||| ||||||||||||||| ||| | ||||||||||    
T  46498415 agagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttgctagatgatctta 46498482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 754
Target Start/End: Original strand, 51944336 - 51944403
Alignment:
Q  687 cacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaa 754  Q
    ||||||||  ||||| | |||||||||| || ||| ||||||||| |||||| |||||||||||||||    
T  51944336 caccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa 51944403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 676 - 757
Target Start/End: Original strand, 5156679 - 5156761
Alignment:
Q  676 tttgtagc-gatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcc 757  Q
    |||||||| |||||||||||  ||||| |||||||||||   ||||| ||||| || ||||||| |||||| |||||||||||    
T  5156679 tttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatcc 5156761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 46554263 - 46554173
Alignment:
Q  277 agatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgag 367  Q
    |||||| ||||| |||||||||||  |||| ||||| ||||||||||||| | ||||| | ||| |||||||  ||||||| |||| ||||    
T  46554263 agatgaccgtcatttctctatgtactttttacttcccgatgcaaaagatgggttgtcagctttgattgagaaagtggcttcggaatatgag 46554173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 27243120 - 27243153
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgta 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  27243120 caccactttatgtgggttccatttccaaagtgta 27243153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 43657101 - 43657040
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||| |||||||||||||| |||||||   |||||| ||||| | |||||||    
T  43657101 caccactttatgtgagttccatttccaaagtgtaggtctcacattgttttcaccaaataaaa 43657040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 51942982 - 51943035
Alignment:
Q  83 ctcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgat 136  Q
    ||||| ||||| |||||  ||||||||| |||| ||||||||||||||||||||    
T  51942982 ctcatctttgctaatgcgttgtactttagaggagcatggaatgagaagtttgat 51943035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 220 - 615
Target Start/End: Complemental strand, 9692854 - 9692467
Alignment:
Q  220 gtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgca 319  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||| |||| ||| || |||| |||||||||||||| |||||||||||| |||||    
T  9692854 gtttattagagcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatgca 9692755  T
Q  320 aaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttca 419  Q
    |||||||  || | | |  ||||||||||  ||||||||||||||||||| ||||| ||||| ||||||     ||||  ||||    ||||||| |||     
T  9692754 aaagatgtactattagctatggttgagaaagtggcttctgaatttgagttcctagagcacaagcttcctta---taaactagtgagaataggtgaattcc 9692658  T
Q  420 agattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaat 519  Q
    | ||||||||||||||  |||| |||||| |||||||| ||  || || ||||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  9692657 aaattccaagattcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaat 9692558  T
Q  520 ggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaaggcactcaagttgct 615  Q
    ||||||    ||| |||| ||| || |||| | |||||||||||||  |||||||| ||||||||||||||||| || ||||||||| ||| ||||    
T  9692557 ggtgga---ctctcttgaaggtcaagacctttctgtttccaacata--tttcacaagtctttcattgaagtaaacgaggaaggcactgaagctgct 9692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 220 - 615
Target Start/End: Complemental strand, 9675832 - 9675445
Alignment:
Q  220 gtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgca 319  Q
    ||||||| ||| |||||||||||||||||| |||| ||| |||||| | |||||   |||| |||| |||||||||||||| |||||||||||| |||||    
T  9675832 gtttattagagcttttgatggttttaaagtgctttgtctcccttatgagcaaggtggagataagcgacaattctctatgtacatttttcttccaaatgca 9675733  T
Q  320 aaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttca 419  Q
    |||| ||  || ||  |  ||||||| ||| ||||||||||||||||||| ||||| | ||| ||||||     ||||  ||||   |||||| | |||     
T  9675732 aaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagcccaagcttcctta---taaacgagtgaaagtaggtaatttcc 9675636  T
Q  420 agattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaat 519  Q
    | ||||||||||||||  |||| |||||| |||||||| ||   | |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  9675635 aaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaat 9675536  T
Q  520 ggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaaggcactcaagttgct 615  Q
    ||||||    ||| |||| ||| || || | | |||||||||||||  |||||||| |||  ||||||||||||||| ||||||||| ||| ||||    
T  9675535 ggtgga---ctctcttgaaggtcaagacttttctgtttccaacata--tttcacaagtctaccattgaagtaaatgaggaaggcactgaagctgct 9675445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 683 - 779
Target Start/End: Complemental strand, 9675388 - 9675292
Alignment:
Q  683 cgatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatcttaactt 779  Q
    |||||||||||| |||||| |||||||||||| |||||||  ||||||| ||||||| |||||||| ||||||||| ||||||| ||||||||||||    
T  9675388 cgatcaccctttcctatttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtgatcttaactt 9675292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 683 - 779
Target Start/End: Complemental strand, 9692410 - 9692314
Alignment:
Q  683 cgatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatgatcttaactt 779  Q
    |||||||||||| |||||| |||||||||||| || ||||  ||| ||| ||||||| |||||||| ||||||||| ||||||| ||||||||||||    
T  9692410 cgatcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacaggttctcaatcctcttgttgggtgatcttaactt 9692314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 23142920 - 23142859
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||| |||||||||    
T  23142920 caccactttatgtgggttccatttccaaagtctaggttccacattgttttcacccaataaaa 23142859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 33417757 - 33417818
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||| ||||||  ||||||||    
T  33417757 caccactttatgtgggtttcatttccaaagtgtaggtcctacattaatttcactcaataaaa 33417818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 7599524 - 7599457
Alignment:
Q  5 cactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||| |  |||||||| |||||||||    
T  7599524 cactttatgtgggttccttttccaaagtgtaggtcctacattgattttactcaataaaa-aagtgagtg 7599457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 43026368 - 43026412
Alignment:
Q  4 ccactttatgtgggttccatttccaaaatgtaggttctacattga 48  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  43026368 ccactttatgtgggttccatttccaaagtgtaggtcctacattga 43026412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 410 - 602
Target Start/End: Complemental strand, 21464139 - 21463952
Alignment:
Q  410 ggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggtt 509  Q
    ||||| |||| |||||| | |||||| ||||| |||||| |||||  | || ||| | |||| ||| |||| ||| |||||||||||||||  |||| ||    
T  21464139 ggtgacttcaggattccgaaattcaagatttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctt 21464040  T
Q  510 ttacaaaaatggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaagg 602  Q
    | |||||||||||||| |||    ||   | | ||||||| ||||| |||||||||  |||||||| ||||| ||||||||||| ||||||||    
T  21464039 tgacaaaaatggtggactctcgaatt---gctcaaaacctttatgtgtccaacata--tttcacaagtcttttattgaagtaaacgaagaagg 21463952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 28211991 - 28211929
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaat 64  Q
    ||||| ||||||||||||||||||  ||| | ||||| |||||||||||||| ||||||||||    
T  28211991 caccattttatgtgggttccatttttaaagtataggtcctacattgatttcacccaataaaat 28211929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 902478 - 902417
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||  |||||||||||  ||||| || |||||||||||| |||||||||    
T  902478 caccactttatgtgggacccatttccaaagcgtaggatccacattgatttcacccaataaaa 902417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 1205902 - 1205963
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||| ||||||| ||||||||| |||||||  |||||||||||||  ||||||||    
T  1205902 caccactttatatgggttctatttccaaagtgtaggtcttacattgatttcactcaataaaa 1205963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 35689555 - 35689625
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||||||| ||||||||| |||| |||| || | |||||| ||||| ||||||||| |||||||||    
T  35689555 caccactttatgtgagttccattttcaaagtgtaagtcccacattgttttcacccaataaaa-aagtgagtg 35689625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 12212230 - 12212169
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||  ||||||||||| ||||||  | |||||||||||| |||| ||||    
T  12212230 caccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaa 12212169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 12456658 - 12456597
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||  ||||||||||| ||||||  | |||||||||||| |||| ||||    
T  12456658 caccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaa 12456597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 34303543 - 34303482
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||| ||||||| ||| |||| |||| |||||||  ||||||||||||| |||||||||    
T  34303543 caccactctatgtggcttcgattttcaaagtgtaggtcttacattgatttcacccaataaaa 34303482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 4e-53; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 220 - 605
Target Start/End: Original strand, 35162428 - 35162804
Alignment:
Q  220 gtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgca 319  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||||||  ||||||||||||| | |||||||||| |||||    
T  35162428 gtttattagagcttttgatggttttaaagttcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtaca-ttttcttccaaatgca 35162526  T
Q  320 aaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttca 419  Q
    |||||||  |||||| | |||||||||||| |||||||||| |||||| | |||||  |||  ||||||     ||| | |||| | |||||||  ||||    
T  35162527 aaagatggcctgtcagctttggttgagaaggtggcttctgattttgagctcctagagaacatgcttcct---tgtaatagagtgccagtaggtggcttca 35162623  T
Q  420 agattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaat 519  Q
    | ||||||| ||||||  |||| | |||| |||||||| ||  |  | |||||||  ||||||||||||||||||||||| |||||||||| ||||||||    
T  35162624 aaattccaaaattcaaattttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaat 35162723  T
Q  520 ggtggattcttcttttgagggtgaaaacctatatgtttccaacatatttttcacaaatctttcattgaagtaaatgaagaaggcac 605  Q
    ||||||    ||  |||| ||| ||||||| |  ||||||||||||  |||||||| ||||||||||||||||||||  |||||||    
T  35162724 ggtgga---ctcacttgaaggtcaaaaccttttagtttccaacata--tttcacaagtctttcattgaagtaaatgagaaaggcac 35162804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 221 - 525
Target Start/End: Original strand, 35155408 - 35155709
Alignment:
Q  221 tttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaa 320  Q
    |||||| ||| ||||||||||||||||||||||  |||||| ||||| ||||| |||||||||||  ||||||||||||| |||||||||||| ||||||    
T  35155408 tttattagagcttttgatggttttaaagttcttcgtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaa 35155507  T
Q  321 aagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaa 420  Q
    ||||||  || ||| | |||||||||||| ||||||||||||||||||| ||||| ||||| ||||||     ||||| || |   |||||||  |||||    
T  35155508 aagatggactatcagctttggttgagaaggtggcttctgaatttgagttgctagagcacaagcttcct---tataaaacagcgcgagtaggtggcttcaa 35155604  T
Q  421 gattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaatg 520  Q
     ||||||||||||||  |||| | |  | ||||| || || ||| | |||| ||  ||||||||||||||||||||||| |||| ||||| |||||||||    
T  35155605 aattccaagattcaaattttcatctaagcttgaatcttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatg 35155704  T
Q  521 gtgga 525  Q
    |||||    
T  35155705 gtgga 35155709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 75 - 373
Target Start/End: Original strand, 15555856 - 15556154
Alignment:
Q  75 taaccaaactcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaa 174  Q
    |||||| |||||| |||||||||||| ||||||||||||||  |||| || ||||||||||| ||||   ||||||||||  ||||||| ||||| | ||    
T  15555856 taaccagactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcaccttctcaa 15555955  T
Q  175 tggtagctccgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggc 274  Q
    |||||||||  |||| ||||| || |||| |  | |  || | |  | |||||| | |||||||||||| ||||| |||| ||||| |||||| ||||||    
T  15555956 tggtagctcactcaaggttccgtttatgagcagcaaagaggatcaatatattggtgcttttgatggtttcaaagtactttgtcttcattataaacaaggc 15556055  T
Q  275 aaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttacta 373  Q
     || |||| || | ||||||||| ||  || |||||||||||||||||||||  || ||  | |||||||| ||| ||||||| |||| ||||||||||    
T  15556056 caatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttacta 15556154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 16178658 - 16178719
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16178658 caccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatccaataaaa 16178719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 525
Target Start/End: Original strand, 15556188 - 15556303
Alignment:
Q  410 ggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggtt 509  Q
    ||||| ||||  |||||||  |||||||| || |||||| |||||||| || ||| | |||||||  |||||||| |||||||||||||| | |||||||    
T  15556188 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcccggaggtt 15556287  T
Q  510 ttacaaaaatggtgga 525  Q
    | || |||||||||||    
T  15556288 tgactaaaatggtgga 15556303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 51206121 - 51206179
Alignment:
Q  5 cactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||| ||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  51206121 cactttatgtgagtttcattttcaaaatgtaggtcctacattgatttcacccaataaaa 51206179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13070015 - 13070064
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgattt 51  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  13070015 caccactttatgtgggttccattttcaaagtgtaggtcctacattgattt 13070064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 44832538 - 44832599
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| ||||||||| ||||||||||||| || |||| |||||||||||||| |||||||||    
T  44832538 caccattttatgtggattccatttccaaagtgcaggtcctacattgatttcacccaataaaa 44832599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 41278722 - 41278662
Alignment:
Q  3 accactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||| || ||| |||||||||    
T  41278722 accactttatgtgggttccattttcaaaatgttggtcctacattcatatcacccaataaaa 41278662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 754
Target Start/End: Original strand, 35155852 - 35155922
Alignment:
Q  684 gatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaa 754  Q
    |||||||||||  |||||||||||||||||| || ||||  ||||||||||||||| ||||| ||| ||||    
T  35155852 gatcaccctttcttatttttaattagagaagatttgacccaaacaatcctctttgccggacaagtgttcaa 35155922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 754
Target Start/End: Original strand, 35162872 - 35162942
Alignment:
Q  684 gatcacccttttctatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaa 754  Q
    ||||| |||||  ||||| |||||||||||| |||||||  ||||||||||||||| ||||| ||||||||    
T  35162872 gatcatcctttcttatttctaattagagaagattcgacccaaacaatcctctttgcgggacaagtgctcaa 35162942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 758
Target Start/End: Original strand, 15556465 - 15556526
Alignment:
Q  697 tatttttaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcct 758  Q
    ||||| |||| ||||||| || |||||| ||||||||||||| |||||||||||| ||||||    
T  15556465 tatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcct 15556526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37315635 - 37315696
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||  ||| ||||| ||||  ||||||||||||||||||||| |||||||||    
T  37315635 caccactttatgtaagtttcattttcaaagcgtaggttctacattgatttcacccaataaaa 37315696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 25719218 - 25719183
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtagg 37  Q
    |||||||||||||||||| |||||||||||||||||    
T  25719218 caccactttatgtgggtttcatttccaaaatgtagg 25719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 30867037 - 30866976
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||| |||| ||||| | | |||||| ||||| | |||||||    
T  30867037 caccactttatgtgggttccattttcaaagtgtagatcccacattgttttcacctaataaaa 30866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 39016738 - 39016787
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgattt 51  Q
    ||||| |||| |||||||||||||||||| |||||  |||||||||||||    
T  39016738 caccattttacgtgggttccatttccaaagtgtagtatctacattgattt 39016787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 47237846 - 47237785
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||| |  ||| ||||| |||| ||||||||||||||  ||||||||||||||||    
T  47237846 caccactttatataagtttcattttcaaagtgtaggttctacatgaatttcatccaataaaa 47237785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 84 - 525
Target Start/End: Original strand, 20144470 - 20144920
Alignment:
Q  84 tcatatttgcaaatgcaatgtactttaaaggaacatggaatgagaagtttgatacttcggtaacgaaagacagtgatttttaccttttaaatggtagctc 183  Q
    |||| ||||| |||||| ||||||||| |||| |||||||||||||||| ||   |||   |||  || ||||||||||| | ||||| ||||| | |||    
T  20144470 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttcaaaaacagaaaacagtgattttcatcttttgaatggaaactc 20144569  T
Q  184 cgtcaaagttcccttcatgacctcctataagaaacggtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgag 283  Q
     ||||| ||||| ||||||     | | ||||  | |||||||| || || ||| |||| ||||||||||  ||||||||||||  ||||  |||||  |    
T  20144570 agtcaaggttcctttcatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacg 20144669  T
Q  284 cgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatc 383  Q
    |||||||||||||||||||||||| | ||  | ||||||||||  ||| || | || ||||||||| || ||||| ||| ||| |||||| |  | ||||    
T  20144670 cgtcaattctctatgtatatttttttgcctaacgcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaattactacatgaaaatc 20144769  T
Q  384 ttcctctc--------attaaaa-aagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaagga 474  Q
    ||  |||         ||| ||| |||||   |||||||| || || ||||||||||||||| |||| |||||| ||||||||| | ||||  | |||||    
T  20144770 ttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaagga 20144869  T
Q  475 gttaggagtgattttacctttctctgctggaggttttacaaaaatggtgga 525  Q
    |||||||||| ||||||| |||| | |||||||||| ||||||||||||||    
T  20144870 gttaggagtggttttaccattctttcctggaggtttgacaaaaatggtgga 20144920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 407 - 529
Target Start/End: Complemental strand, 20168972 - 20168850
Alignment:
Q  407 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggag 506  Q
    |||||||| || || ||||| ||||||||| |||| |||||| ||||||||| | ||||  | |||| |||||||||||||||||| |||| | ||||||    
T  20168972 gtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccattctttcctggag 20168873  T
Q  507 gttttacaaaaatggtggattct 529  Q
    |||| ||||||||||||||||||    
T  20168872 gtttgacaaaaatggtggattct 20168850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 407 - 529
Target Start/End: Original strand, 20359312 - 20359434
Alignment:
Q  407 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggag 506  Q
    |||||||| || || ||||||||||||||| |||| |||||| ||||||||| | ||||  | |||||||||||||||| |||||| |||| | ||||||    
T  20359312 gtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattctttcctggag 20359411  T
Q  507 gttttacaaaaatggtggattct 529  Q
    |||| | ||||||||||||||||    
T  20359412 gtttgaaaaaaatggtggattct 20359434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 42182964 - 42183025
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  42182964 caccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaa 42183025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 28898142 - 28898081
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||    
T  28898142 caccactttatgtgggtttcatttccaaagtgtagatcctacattgatttcatccaataaaa 28898081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 1110273 - 1110334
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| | || || |||||||||||||| |||||||||    
T  1110273 caccactttatgtgggttccatttccaaagtatatgtcctacattgatttcacccaataaaa 1110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 20359116 - 20359269
Alignment:
Q  220 gtttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgca 319  Q
    |||||||| || || ||| |||| ||||||||||  ||||||||||||  ||||  |||||  ||||||||||||||||||||||||| | ||| | |||    
T  20359116 gtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgca 20359215  T
Q  320 aaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttacta 373  Q
    |||||||  ||| || | || ||||||||| || ||||| ||| ||| ||||||    
T  20359216 aaagatggactgccagctttagttgagaagatgacttctaaatatgaattacta 20359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 37228574 - 37228644
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||||||||||||| ||| |||| || |||| |||||||||||||| ||||||||| |||||||||    
T  37228574 caccactttatgtgggttccgttttcaaagtgcaggtcctacattgatttcacccaataaaa-aagtgagtg 37228644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 20169167 - 20169062
Alignment:
Q  221 tttattggagattttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaa 320  Q
    ||||||| || || ||| |||| ||||||||||  ||||||||||||  ||||  |||||  ||||||||||||||||||||||||| | ||| | ||||    
T  20169167 tttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaa 20169068  T
Q  321 aagatg 326  Q
    ||||||    
T  20169067 aagatg 20169062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 31395548 - 31395489
Alignment:
Q  4 ccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||| ||||||||||| | ||||||| ||||||| |||||| |||||||||    
T  31395548 ccactttatgtggattccatttccatagtgtaggtcctacatttatttcacccaataaaa 31395489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 33747025 - 33746955
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    ||||||||||| | ||||||||||| ||| | ||||||| |||||| ||||||||||||||| |||||||||    
T  33747025 caccactttatattggttccatttctaaagtataggttccacattgttttcatccaataaaa-aagtgagtg 33746955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 4964778 - 4964717
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||| || ||||| |||| ||||||| |||||||||| | |||||||||||    
T  4964778 caccactttatgtggatttcattttcaaagtgtaggtcctacattgatcttatccaataaaa 4964717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 6315733 - 6315794
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||| | ||||||||||||||| ||||||| ||||||| ||||  ||||||||||    
T  6315733 caccactttatataggttccatttccaaagtgtaggtcctacattaattttttccaataaaa 6315794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 15508989 - 15509046
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaat 59  Q
    ||||| ||| ||||||||||||||||||| ||||| | |||||||||||||| |||||    
T  15508989 caccattttttgtgggttccatttccaaagtgtagatcctacattgatttcacccaat 15509046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 37719942 - 37719881
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| |||| |||| ||||||||| ||| |||| || ||||||||||||||||||||||||    
T  37719942 caccattttaagtggattccatttctaaagtgtatgtcctacattgatttcatccaataaaa 37719881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 232 - 525
Target Start/End: Original strand, 17708274 - 17708564
Alignment:
Q  232 ttttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctg 331  Q
    ||||||||||||||||||||||  ||||||||| || ||||||||  ||| ||||  |||||| || ||  |||||||||| ||||||||||||| | ||    
T  17708274 ttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttg 17708373  T
Q  332 tcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagat 431  Q
    ||| | ||| |||| | | | |||||| | | ||||||  | ||||||||||||||||    || ||||||||  |||||  |||||| |||||||||||    
T  17708374 tcagctttgattgatacggtagcttctaattctgagtttttggaacacaatcttcctc---gtagaaaagtggaagtaggcaagttcaggattccaagat 17708470  T
Q  432 tcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaatggtgga 525  Q
    |||||||||| |||  ||||||| || ||||     | ||| | |||||| ||| ||||||||| |||   |||||||| ||||||||||||||    
T  17708471 tcaatatttcttttaagattgaagcttctaagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatggtgga 17708564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 232 - 454
Target Start/End: Original strand, 17718098 - 17718317
Alignment:
Q  232 ttttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctg 331  Q
    ||||||||||||||||||||||  ||||||||| || ||||||||  ||| ||||  |||||| || ||  |||||||||| ||||||||||||| | ||    
T  17718098 ttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttg 17718197  T
Q  332 tcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagat 431  Q
    ||  | ||| |||| ||  |  ||||||| | ||||||  | ||||||||||||||||    || ||||||||  |||||  |||||| |||||||||||    
T  17718198 tccgctttgattgataatgtaacttctgattatgagtttttggaacacaatcttcctc---gtagaaaagtggaagtaggcaagttcaggattccaagat 17718294  T
Q  432 tcaatatttcgtttgggattgaa 454  Q
    |||||||||| |||| |||||||    
T  17718295 tcaatatttcttttgagattgaa 17718317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 236 - 454
Target Start/End: Original strand, 16722155 - 16722370
Alignment:
Q  236 gatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaa 335  Q
    |||||||||||||| |||  |||||||||||| |||||||||||||| |||  ||||||||| ||  |||||||||| ||   |||||||| | ||||||    
T  16722155 gatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaa 16722254  T
Q  336 ccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaa 435  Q
      ||| |||| ||  | |||||||| | ||||||  | ||||  ||||||||||    || ||||||||  |||||  |||||| |||||||||||||||    
T  16722255 atttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctc---gtagaaaagtggaagtaggcaagttcaggattccaagattcaa 16722351  T
Q  436 tatttcgtttgggattgaa 454  Q
    |||||| |||| |||||||    
T  16722352 tatttcttttgagattgaa 16722370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 236 - 454
Target Start/End: Original strand, 17699169 - 17699384
Alignment:
Q  236 gatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaa 335  Q
    |||||||||||||| |||  |||||||||||| |||||||||||||| |||  ||||||||| ||  |||||||||| ||   |||||||| | ||||||    
T  17699169 gatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaa 17699268  T
Q  336 ccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaa 435  Q
      ||| |||| ||  | |||||||| | ||||||  | ||||  ||||||||||    || ||||||||  |||||  |||||| |||||||||||||||    
T  17699269 atttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctc---gtagaaaagtggaagtaggcaagttcaggattccaagattcaa 17699365  T
Q  436 tatttcgtttgggattgaa 454  Q
    |||||| |||| |||||||    
T  17699366 tatttcttttgagattgaa 17699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 45909531 - 45909592
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||||||    
T  45909531 caccactttatgtgggttccatttccaaattgtaggtcctacattgattttacccaataaaa 45909592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13919855 - 13919915
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaa 62  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||    
T  13919855 caccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaa 13919915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 19840989 - 19840929
Alignment:
Q  3 accactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||    
T  19840989 accactttatgtgggttccatttccaaagtgtaggtcctatattgatttcacccaataaaa 19840929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 17354632 - 17354562
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||| |||||||||    
T  17354632 caccactttatgtgggttctatttccaaagtgtaggtcctacattgattttacccaataaaa-aagtgagtg 17354562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 22786226 - 22786277
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttca 53  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  22786226 caccactttatgtgggttccatttccaaagtgtaggttatacattgatttca 22786277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 19494444 - 19494383
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||||||||| |||||||||    
T  19494444 caccactttatgtgggttccattttcaaagtgtagatcctacattgatttcacccaataaaa 19494383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 25428584 - 25428523
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||| |||||||||| ||||| | |||||||||||| |||||||||||    
T  25428584 caccactttatgtgggttacatttccaaagtgtagatcctacattgattttatccaataaaa 25428523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 26703545 - 26703484
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||||||||    
T  26703545 caccactttatgtgggttccatttctaaagtgtaggtcctacatttatttcacccaataaaa 26703484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 14759718 - 14759779
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||||||||    
T  14759718 caccactttaggtaggttctatttccaaagtgtaggtcctacattaatttcatccaataaaa 14759779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 21963235 - 21963174
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| |||||||| |||||||||||||| ||||| | |||||||||||||| |||||||||    
T  21963235 caccattttatgtgagttccatttccaaagtgtagatcctacattgatttcacccaataaaa 21963174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 454
Target Start/End: Original strand, 17735928 - 17736147
Alignment:
Q  232 ttttgatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctg 331  Q
    |||||||||||||||||| |||  ||||||||| || |||||||| ||| |||||  ||||||||| ||  |||||||||| || | |||||||| | ||    
T  17735928 ttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttg 17736027  T
Q  332 tcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagat 431  Q
    ||| | ||| |||| ||  | |||||||| | ||||||  | ||||| || |||||||    |||  ||||    |||||  |||||| |||||||||||    
T  17736028 tcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctc---gtaatcaagtcaaagtaggcaagttcatgattccaagat 17736124  T
Q  432 tcaatatttcgtttgggattgaa 454  Q
    |||||||||| |||| |||||||    
T  17736125 tcaatatttcttttgagattgaa 17736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 31959919 - 31959860
Alignment:
Q  4 ccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||| ||||||||| ||| ||| ||||||| ||||||  ||||||||    
T  31959919 ccactttatgtgggttctatttccaaagtgtgggtcctacattaatttcactcaataaaa 31959860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 17745113 - 17745202
Alignment:
Q  236 gatggttttaaagttctttatcttccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatg 326  Q
    |||||||||||||| |||  ||||||| |||| ||||||||||||| ||||  ||||||||| ||  |||||||||| || | ||||||||    
T  17745113 gatggttttaaagtccttggtcttcct-ataaacaaggcaaagatgggcgtgcattctctatttacttttttcttcctgacgaaaaagatg 17745202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26459068 - 26459137
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagt 72  Q
    ||||||||||||||||||||||||| ||| ||||||| | |||||| ||| | | ||||||| ||||||||    
T  26459068 caccactttatgtgggttccatttctaaagtgtaggtcccacattgtttttacctaataaaa-aagtgagt 26459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 25980824 - 25980885
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| |||||||||| |  ||||||||||||| |  || ||||||||||||||||||||||    
T  25980824 caccattttatgtggggttaatttccaaaatgtggtatccacattgatttcatccaataaaa 25980885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 42224696 - 42224635
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  42224696 caccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaa 42224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 24915130 - 24915191
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||| |||| |||| || |||||||||||||| |||||||||    
T  24915130 caccactttatgtgggttccattttcaaagtgtatgtcctacattgatttcacccaataaaa 24915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 17568807 - 17568746
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||||||||    
T  17568807 caccactttaggtaggttctatttccaaagtgtaggtcctacattaatttcatccaataaaa 17568746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 24990961 - 24991022
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||| |||||||||| |||| |||| || |||||||||||||| |||||||||    
T  24990961 caccactttatgtaggttccattttcaaagtgtatgtcctacattgatttcacccaataaaa 24991022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 13456270 - 13456209
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||| |||||||||||||||||| |||| ||||||  |||||||||||||| | |||||||    
T  13456270 caccattttatgtgggttccattttcaaagtgtaggacctacattgatttcacctaataaaa 13456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 34818261 - 34818331
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||| |||||||||||||||||||| ||| | ||||| |||||||||||| | | ||||||| |||||||||    
T  34818261 caccgctttatgtgggttccatttctaaagtataggtcctacattgattttaccaaataaaa-aagtgagtg 34818331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 40971558 - 40971495
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaata 65  Q
    |||||||||||||  ||| |||||||||| |||||||  ||||||||||| | |||||||||||    
T  40971558 caccactttatgtaagtttcatttccaaagtgtaggtcttacattgattttacccaataaaata 40971495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 868272 - 868211
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||| | |||||| ||| |||||| || ||||| ||||||||| ||||||    
T  868272 caccactttatgtgggattcatttctaaattgtaggatccacattaatttcatcccataaaa 868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 26072178 - 26072239
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||  | |||||||||| ||||||| | |||||| ||||| |||||||||    
T  26072178 caccactttatgtggaattcatttccaaagtgtaggtcccacattgttttcacccaataaaa 26072239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 11135814 - 11135875
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  11135814 caccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaa 11135875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 14094106 - 14094055
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttca 53  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  14094106 caccactttatgtgggttccatttccaaagtgtaggtcctacattgatttca 14094055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 29418556 - 29418627
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||||||| |||| ||||||||| ||||| | |||||||||||||| ||||||||| |||||||||    
T  29418556 caccactttatgtgagttctatttccaaagtgtagatcctacattgatttcacccaataaaaaaagtgagtg 29418627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 11430516 - 11430576
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||    
T  11430516 caccactttatgtgggttccatttccaaagtgtaggtcctacattgaattca-ccaataaaa 11430576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 50773216 - 50773155
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| |||| | |||||||||    
T  50773216 caccactttatgtgggttccatttccaaaatataggtcctacattaattttacccaataaaa 50773155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 13388434 - 13388372
Alignment:
Q  10 tatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||| ||||| |||| ||||||| |||||||||||||||||||||||| |||||||||    
T  13388434 tatgtgggtttcattttcaaagtgtaggtactacattgatttcatccaataaaa-aagtgagtg 13388372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 24436572 - 24436511
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||| |||| |||| ||| ||| |||||||||||||| |||||||||    
T  24436572 caccactttatgtgggttctattttcaaagtgtgggtcctacattgatttcacccaataaaa 24436511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 32848688 - 32848627
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||| |||||||| |||| ||||||| ||||||||| |||| |||||||||    
T  32848688 caccactttatgtggattccattttcaaagtgtaggtcctacattgaattcaaccaataaaa 32848627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 41095704 - 41095644
Alignment:
Q  12 tgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||||||| |||| ||||||| |||||||||||||| ||||| |||||||||||||    
T  41095704 tgtgggttccattttcaaagtgtaggtcctacattgatttcacccaat-aaataagtgagtg 41095644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 41918070 - 41918131
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||| |||||||| |||| ||||||| |||||||||||| | |||||||||    
T  41918070 caccactttatgtggattccattttcaaagtgtaggtcctacattgattttacccaataaaa 41918131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 28109943 - 28110011
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagt 72  Q
    ||||| |||||||||||||||||| |||| ||||| | ||| | |||||||||||||||||| ||||||||    
T  28109943 caccattttatgtgggttccattt-caaagtgtagatcctagaatgatttcatccaataaaa-aagtgagt 28110011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 43832348 - 43832394
Alignment:
Q  6 actttatgtgggttccatttccaaaatgtaggttctacattgatttc 52  Q
    |||||||||||||| |||||||||| ||||| | |||||||||||||    
T  43832348 actttatgtgggtttcatttccaaagtgtagatcctacattgatttc 43832394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 19090320 - 19090259
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||    
T  19090320 caccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcaaccaataaaa 19090259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 35128828 - 35128767
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||    
T  35128828 caccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaaa 35128767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10060936 - 10061004
Alignment:
Q  4 ccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaataagtgagtg 73  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| ||| ||||||||| |||||||||    
T  10060936 ccactttatgtgggttccattttcaaagtgtaggtcctacattgatctcacccaataaaa-aagtgagtg 10061004  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 12794919 - 12794858
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||||||| ||| ||||| |||||||||||| ||||||| ||||||||||||||||    
T  12794919 caccactttatgtgagtttcattttcaaaatgtaggtcctacattaatttcatccaataaaa 12794858  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 19737537 - 19737479
Alignment:
Q  5 cactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||| | |||||||||    
T  19737537 cactttatgtgggtttcatttccaaagtgtaggtcctacattgatttgagccaataaaa 19737479  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 373477 - 373537
Alignment:
Q  5 cactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaata 65  Q
    |||||||||||| |||||||| ||||  |||||| |||||||||||| |||||||||||||    
T  373477 cactttatgtggattccattttcaaagggtaggtcctacattgattttatccaataaaata 373537  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 6992376 - 6992327
Alignment:
Q  2 caccactttatgtgggttccatttccaaaatgtaggttctacattgattt 51  Q
    |||||||||||||| ||| |||||||||| ||||||| ||||||||||||    
T  6992376 caccactttatgtgagtttcatttccaaagtgtaggtcctacattgattt 6992327  T

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Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 31017 - 30957
Alignment:
Q  3 accactttatgtgggttccatttccaaaatgtaggttctacattgatttcatccaataaaa 63  Q
    |||||||||| |||||||| ||| |||| |||||||||||||||||| ||| |||||||||    
T  31017 accactttatatgggttccgttttcaaagtgtaggttctacattgatgtcacccaataaaa 30957  T

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