View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_20 (Length: 349)
Name: NF11073_low_20
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 23517666 - 23517384
Alignment:
| Q |
1 |
cttcaaaccttcttcatctctctaattgtaagtattcaaatacnnnnnnnnnnnnnnnnnntgtttgttttgtgtgttttcttcatatgggctttcaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
23517666 |
cttcaaaccttcttcatctctctaattgtaagtattcaaatacctctctcttctcttctcttgtttgttttgtgtgttttcttcatatgggctttcaact |
23517567 |
T |
|
| Q |
101 |
tgttcattaatcaatggatcctttaactgtcagtaaccaaaaaactactatcttgcattgctttcagatgtggttaatgttaaaaaacatgaaaaattct |
200 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23517566 |
tattcattaatcaatggatcctttaactgtcaataaccaaaaaactactatcatgcattgctttcagatgtggttaatgttaaaaaacatgaaaaattct |
23517467 |
T |
|
| Q |
201 |
gatccttannnnnnnnnnnnccatttctatgttactgtcattttaacaatgttgtcttgtgtttgcttatcttaagctttgtt |
283 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23517466 |
gatccttatttttgttttttccatttctatgttactgtcattttaacaatgttgtcttgtgtttgcttatcttaagctttgtt |
23517384 |
T |
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