View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_21 (Length: 335)
Name: NF11073_low_21
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_21 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 13475630 - 13475768
Alignment:
| Q |
195 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
294 |
Q |
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| T |
13475630 |
aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata--gagttacagcagagtaattgcagagaa |
13475727 |
T |
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| Q |
295 |
atacgagaatgataagcataaggaaaattacactcacctcc |
335 |
Q |
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| T |
13475728 |
atacgagaatgataggaataagtaaaattacactcacctcc |
13475768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
| Q |
123 |
aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
207 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
14044769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
| Q |
114 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa |
193 |
Q |
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| T |
14020607 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 14020480 - 14020353
Alignment:
| Q |
195 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
294 |
Q |
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| T |
14020480 |
aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata--gagttacag-----------cagagaa |
14020394 |
T |
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| Q |
295 |
atacgagaatgataagcataaggaaaattacactcacctcc |
335 |
Q |
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| T |
14020393 |
atacgagaatgataagaataaggaaaattacactcacctcc |
14020353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 14044916 - 14044861
Alignment:
| Q |
19 |
ccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt |
74 |
Q |
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| T |
14044916 |
ccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt |
14044861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 14108636 - 14108546
Alignment:
| Q |
245 |
tgacaattgacaatactgatatagagttacagtagagtaaatgcagagaaatacgagaatgataagcataaggaaaattacactcacctcc |
335 |
Q |
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| T |
14108636 |
tgacaattgacaatatcgacatagagttacagcagagtaatttcagagaaatacgaaaatgataggaataatgaaaattacactcacctcc |
14108546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 14020708 - 14020649
Alignment:
| Q |
48 |
tgttccagctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat |
107 |
Q |
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| T |
14020708 |
tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat |
14020649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
119 |
caaaaaatgtatttgtctaacggaatttcag |
149 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
| Q |
178 |
tatgttcacatttcaataaaaatttatcta |
207 |
Q |
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| T |
14044720 |
tatgttcacatttcaataaaaatttatcta |
14044691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 10507846 - 10507903
Alignment:
| Q |
237 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
294 |
Q |
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| T |
10507846 |
ttagtttatgacaattgacaatactgatatagacttacagcagagtaattgcagagaa |
10507903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
| Q |
119 |
caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa |
171 |
Q |
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| T |
10507760 |
caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 8753659 - 8753612
Alignment:
| Q |
237 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaa |
284 |
Q |
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| T |
8753659 |
ttagtttatgacaattgacattagtgatatagacttacagcagagtaa |
8753612 |
T |
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