View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_22 (Length: 334)
Name: NF11073_low_22
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 12118480 - 12118174
Alignment:
| Q |
5 |
cggagcttaggaagctccaaaagcatagcgtttgctgcaaaattgccatcattttttgggttactaaggtcaagttcttcaaggaaagggaaacaattcg |
104 |
Q |
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| T |
12118480 |
cggagcttaggaagctccaaaagcatagagtttgctgcaaaattgccattatttttagggttactatgatcaagttcttcaaggaaagggaaacaaatca |
12118381 |
T |
|
| Q |
105 |
atatcataaccatgtcgtttctacgaagaaaatcaatattggaaaatgtgagagaggtcacagttgtaatatatttggacaaaattcgtaaccactctgc |
204 |
Q |
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| T |
12118380 |
atatcataaccatgtcatttttatgaagaaaatcaatgttggaaaatgtgagagatgtcacagttgtaatgtatttggacaaaactcgtaacccctctgt |
12118281 |
T |
|
| Q |
205 |
gggaatggtggattggttcgagaatatgagggatttgagttttaatgagcaagtggagatttggcagagaagagagttgaggtcaccggagaagtgcgtg |
304 |
Q |
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|||||| ||||||||||| |||||||| |||||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
12118280 |
gggaatagtggattggttggagaatataagggatttgagtttcaatgcgcaagtgtagatttggtagagaagagagttgaggtcaccgcagaagtgggtg |
12118181 |
T |
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| Q |
305 |
aaatgga |
311 |
Q |
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||||||| |
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| T |
12118180 |
aaatgga |
12118174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 1527375 - 1527072
Alignment:
| Q |
6 |
ggagcttaggaagctccaaaagcatagcgtttgctgcaaaattgccatcattttttgggttactaaggtcaagttcttcaaggaaagggaaacaattcga |
105 |
Q |
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| T |
1527375 |
ggagcttaggaagctccaaaagcatagcttttgcagcaaaatttccatcttttttagggttactaaggtcaagttcttcaagggaagggaaacaattcga |
1527276 |
T |
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| Q |
106 |
tatcataaccatgtcgtttctacgaagaaaatcaatattggaaaatgtgagagaggtcacagttgtaatatatttggacaaaattcgtaaccactctgcg |
205 |
Q |
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| T |
1527275 |
tatcataaccatgttcttttttcgtataaaatgaaaattggaaaatgtgagag--gtcacagttgtaatatatttggacaaaactcgtaacccctctgcg |
1527178 |
T |
|
| Q |
206 |
ggaatggtggattggttcgagaatatgagggatttgagttttaatgagcaagtggagatttggcagagaagagagttgaggtcaccggagaagtgcgtga |
305 |
Q |
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||||| | | |||||| |||||| |||||||||||||||| |||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
1527177 |
ggaattcttggttggttggagaatttgagggatttgagtttcaatgggaaagtggagattgggcagagaaaagagttgaggtcaccggagaagtgcgtga |
1527078 |
T |
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| Q |
306 |
aatgga |
311 |
Q |
| |
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|||||| |
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| T |
1527077 |
aatgga |
1527072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 101 - 290
Target Start/End: Complemental strand, 12116282 - 12116093
Alignment:
| Q |
101 |
ttcgatatcataaccatgtcgtttctacgaagaaaatcaatattggaaaatgtgagagaggtcacagttgtaatatatttggacaaaattcgtaaccact |
200 |
Q |
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||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||| || |
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| T |
12116282 |
ttcgatatcataaacatgtcgtatttatgaagaaaatcaatattggaaaatgtgagagaggtcacggttgtaatatatttcgaaaaaactcgtaacccct |
12116183 |
T |
|
| Q |
201 |
ctgcgggaatggtggattggttcgagaatatgagggatttgagttttaatgagcaagtggagatttggcagagaagagagttgaggtcac |
290 |
Q |
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| T |
12116182 |
ctgcgggaatggtggattggatggagaatttaaggtatttcagtttcaataggcaagtggagatttggcagagaagagagttgatgtcac |
12116093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 547932 - 548043
Alignment:
| Q |
62 |
gggttactaaggtcaagttcttcaaggaaagggaaacaattcgatatcataaccatgtcgtttctacgaagaaaatcaatattggaaaatgtgagagagg |
161 |
Q |
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|||||||| |||||||||||||||||||||||||| ||| ||||| ||||| |||||| ||| ||| ||||||| |||||| | ||||||||| |
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| T |
547932 |
gggttactgaggtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagt |
548031 |
T |
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| Q |
162 |
tcacagttgtaa |
173 |
Q |
| |
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||| |||||||| |
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| T |
548032 |
tcaaagttgtaa |
548043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 641924 - 641964
Alignment:
| Q |
62 |
gggttactaaggtcaagttcttcaaggaaagggaaacaatt |
102 |
Q |
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| T |
641924 |
gggttactgaggtcaagttcttcgagtaaagggaaacaatt |
641964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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