View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11073_low_23 (Length: 319)
Name: NF11073_low_23
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 28410184 - 28409870
Alignment:
| Q |
1 |
caaacccgcgttgagcgttacggcgccgataaccgtttcgtgtatcgattcgattggatccagaattcgaggaggttgatttttcaatggcgtatagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28410184 |
caaacccgcgttgagcgttacggcgccgataaccatttcgtgtatcgattcgattggatccagaattcgaggaggttgatttttcaatggcgtatagaag |
28410085 |
T |
|
| Q |
101 |
gagacaatacggaacttctaaatcttctcctttgattttcgaagacgaagcaattcgaaaccctaatccaattgcagtatcgtcttcttcgagtaatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28410084 |
gagacaatacggaacttctaaatcttctcctttgattttcgaagacgaagcaattcgaaaccctaatccaattgcagtatcgtcttcttcgagtaatgat |
28409985 |
T |
|
| Q |
201 |
ggcgttgacgcttcttcttcggattctcttgctgctaaagctattagagcttcttcggcgcgtcgtgattcttcgctttcgtcgctttatggtcactcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28409984 |
ggcgttgacgcttcttcttcggattctcttgctgctaaagctattagagcttcttcggcgcgtcgtgattcttcgctttcgtcgctttatggtcactcca |
28409885 |
T |
|
| Q |
301 |
atctctctgctcctc |
315 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
28409884 |
atctctcttctcctc |
28409870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University