View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_26 (Length: 234)

Name: NF11073_low_26
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_26
NF11073_low_26
[»] chr4 (14 HSPs)
chr4 (19-216)||(6665409-6665606)
chr4 (19-175)||(6503552-6503708)
chr4 (22-216)||(6502260-6502454)
chr4 (64-217)||(6832317-6832470)
chr4 (49-212)||(6811784-6811947)
chr4 (26-216)||(6792315-6792505)
chr4 (35-216)||(6626771-6626952)
chr4 (49-204)||(6748813-6748965)
chr4 (72-216)||(6769453-6769597)
chr4 (35-216)||(6647012-6647193)
chr4 (73-216)||(6550383-6550526)
chr4 (146-216)||(6593194-6593264)
chr4 (108-153)||(6813876-6813921)
chr4 (70-138)||(4322950-4323018)
[»] scaffold0729 (1 HSPs)
scaffold0729 (26-216)||(6124-6314)
[»] chr7 (1 HSPs)
chr7 (124-158)||(34727565-34727599)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 6665409 - 6665606
Alignment:
Q  19 aagatacctacagttaaatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6665409 aagatacctacagttaaatcaggaagcgttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagc 6665508  T
Q  119 tacaggctttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6665509 tacaggctttgtgtggaagtcatgaatggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 6665606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 6503708 - 6503552
Alignment:
Q  19 aagatacctacagttaaatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagc 118  Q
    ||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |    
T  6503708 aagatacgtactgttgaatcaggaagagttattttaaaagaaaggcttcaacataaaagggtacttcttctacttgacaatgttgataaattggagcaac 6503609  T
Q  119 tacaggctttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattcatca 175  Q
    || ||||||||||||||| ||  ||  ||||||||  ||||||||||||| ||||||    
T  6503608 taaaggctttgtgtggaaatcgggattggtttggtccaggcagcaaaataatcatca 6503552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 6502454 - 6502260
Alignment:
Q  22 atacctacagttaaatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctac 121  Q
    |||||| ||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||| | | ||||||||| |||     
T  6502454 ataccttcagttgaatcaggaagaattattttaaaagaaagacttcaacataaaagggtacttcttctactttacaatgttgacaaattggagcaactaa 6502355  T
Q  122 aggctttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    ||||||||||||||||||  ||  |||||||   |||||| |||||| ||||||  || |   |||||||||| |||||||||||||||||||||    
T  6502354 aggctttgtgtggaagtcgggattggtttggcccaggcagaaaaataatcatcacaacaagcaatagacatctgctcaaggagcatggagttgac 6502260  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 6832317 - 6832470
Alignment:
Q  64 cttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagtcatgaacggtttggtgaaggcagca 163  Q
    |||| ||||||||||||||||||| |||||||||||||| ||| |||||| |||||| ||||||||||||||| ||  ||| ||||||||  ||| ||||    
T  6832317 cttcgacataaaagggtacttcttatacttgacaatgttgataaattggatcagctaaaggctttgtgtggaaatcgggaatggtttggtcgaggaagca 6832416  T
Q  164 aaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgact 217  Q
    ||||| ||||||  || | |||||||||||| |||||| | |||||||||||||    
T  6832417 aaataatcatcacaacaagagatagacatctactcaagaaacatggagttgact 6832470  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 6811784 - 6811947
Alignment:
Q  49 attttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagtcatgaacggt 148  Q
    ||||||||||| ||  ||| ||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | |||||||| ||||||| |||| |||    
T  6811784 attttaaaagaaagatttcgacataaaagggtacttcttgtacttgacgatgttaataaattggagcagctaaacgctttgtgcggaagtcgtgaatggt 6811883  T
Q  149 ttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagt 212  Q
    ||||    || ||||||||| ||||||  || | |||||||||||| |||||||||||||||||    
T  6811884 ttggcaccggtagcaaaataatcatcacaacaagagatagacatctactcaaggagcatggagt 6811947  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 6792315 - 6792505
Alignment:
Q  26 ctacagttaaatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggc 125  Q
    ||||| || ||||||||| ||  || |||||| | || |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |  | ||    
T  6792315 ctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttgacaatgttgataaattggagcagttgaatgc 6792414  T
Q  126 tttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    ||| ||  ||||||   || ||||||| | ||| || |||||| |||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  6792415 tttatgcagaagtcggaaatggtttggagcaggtagtaaaataatcatcacgacaacagatagacatctactcaaagagcatggagttgac 6792505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 6626952 - 6626771
Alignment:
Q  35 aatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtgg 134  Q
    ||||||| | ||| ||||||||||| || || |  |||||||| ||||||||| |||||||| ||||| ||| ||||||||||||  || ||||||||||    
T  6626952 aatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtacttcttatacttgacgatgttaataaattggagcagctgaagtctttgtgtgg 6626853  T
Q  135 aagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    || ||  ||  ||||||||  ||| ||||||||| |||| || |||| |||||||||||| || | ||||||||||||||||    
T  6626852 aaatcgggattggtttggtccaggtagcaaaataatcattatcaccagagatagacatctacttatggagcatggagttgac 6626771  T

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Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 6748813 - 6748965
Alignment:
Q  49 attttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagtcatgaacggt 148  Q
    ||||||||||| || ||||||||||||| ||||||| || ||||||    |||| ||| ||||||||||||| | || ||||| ||||||| |||| |||    
T  6748813 attttaaaagaaagacttcaacataaaaaggtactttttatacttgg---tgttgataaattggagcagctaaatgccttgtgcggaagtcgtgaatggt 6748909  T
Q  149 ttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggag 204  Q
    |||||||||| ||||||||| ||||| |||| | ||||||||| || |||||||||    
T  6748910 ttggtgaaggtagcaaaataatcatcttgacaagagatagacaactactcaaggag 6748965  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 6769453 - 6769597
Alignment:
Q  72 taaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattc 171  Q
    |||||||||||||||| |||| || || ||| ||| ||||||||||||| | ||||||||||||||||   || |||||| |  ||| ||||||||| ||    
T  6769453 taaaagggtacttcttgtactcgaaaacgttgataaattggagcagctaaatgctttgtgtggaagtcggaaatggtttgctccaggaagcaaaataatc 6769552  T
Q  172 atcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    |||| ||| |  ||||||||||| |||||||||||||||||||||    
T  6769553 atcacgactagggatagacatctactcaaggagcatggagttgac 6769597  T

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Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 6647012 - 6647193
Alignment:
Q  35 aatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtgg 134  Q
    ||||||||| |  |||||||||||| |  |||||  ||||||||||||||||| |||||||||||||| |||   |||||||| || || ||||||||||    
T  6647012 aatcaggaaaaaatattttaaaagaaaaacttcataataaaagggtacttcttgtacttgacaatgttgataagctggagcagttaaagtctttgtgtgg 6647111  T
Q  135 aagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    || ||  ||  ||||||||  ||| ||||||||| ||||||  |||| |||||| ||||| |||||||||||  ||||||||    
T  6647112 aaatcgggattggtttggtccaggtagcaaaataatcatcactaccagagataggcatctactcaaggagcacagagttgac 6647193  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 6550526 - 6550383
Alignment:
Q  73 aaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattca 172  Q
    |||||| |||||||| | |||||||||||| ||| ||||||||||||| | |||||||||| || || |||| ||||||||| ||| ||||||||| |||    
T  6550526 aaaaggatacttcttgttcttgacaatgttgataaattggagcagctaaatgctttgtgtgaaaatcctgaatggtttggtgtaggaagcaaaataatca 6550427  T
Q  173 tcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    |||   | |   |||||||||| ||||||||||||||| |||||    
T  6550426 tcacatctaggaatagacatctcctcaaggagcatggatttgac 6550383  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 6593264 - 6593194
Alignment:
Q  146 ggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    ||||||||||||| ||||||||| ||||||  || | |||||||||||| |||||| |||||||| |||||    
T  6593264 ggtttggtgaaggtagcaaaataatcatcacaacaagagatagacatctactcaagaagcatggaattgac 6593194  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 6813876 - 6813921
Alignment:
Q  108 attggagcagctacaggctttgtgtggaagtcatgaacggtttggt 153  Q
    ||||||||||||| |||||||||||||||| || ||| ||||||||    
T  6813876 attggagcagctaaaggctttgtgtggaagccacgaatggtttggt 6813921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 4323018 - 4322950
Alignment:
Q  70 cataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggctttgtgtggaagt 138  Q
    |||||||| ||||||||| |||||||| ||||  ||| | |||| |||||| | |||||||||||||||    
T  4323018 cataaaagagtacttcttgtacttgacgatgtgaataaactggaccagctaaatgctttgtgtggaagt 4322950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 6314 - 6124
Alignment:
Q  26 ctacagttaaatcaggaagagttattttaaaagacaggcttcaacataaaagggtacttcttctacttgacaatgtttatagattggagcagctacaggc 125  Q
    ||||| || ||||||||| ||  || |||||| | || |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |  | ||    
T  6314 ctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttgacaatgttgataaattggagcagttgaatgc 6215  T
Q  126 tttgtgtggaagtcatgaacggtttggtgaaggcagcaaaatattcatcatgaccacagatagacatcttctcaaggagcatggagttgac 216  Q
    ||| ||  ||||||   || ||||||| | ||| || |||||| |||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  6214 tttatgcagaagtcggaaatggtttggagcaggtagtaaaataatcatcacgacaacagatagacatctactcaaagagcatggagttgac 6124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 34727599 - 34727565
Alignment:
Q  124 gctttgtgtggaagtcatgaacggtttggtgaagg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  34727599 gctttgtgtggaagtcatgaatggtttggtgaagg 34727565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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