View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_3 (Length: 672)
Name: NF11073_low_3
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Complemental strand, 10434395 - 10433759
Alignment:
| Q |
18 |
gttaggagctcaaaaacatgaatcttaatatgccctaagtatgtgtttggacaaaattaacttgattttataaaattggtttgaaatgaaatgacttatg |
117 |
Q |
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| T |
10434395 |
gttaggagctcaaaaacatgaatcttaatatgccttaagtatgtgtttggacaaaattaacttgattttacaaaattggtttgaaatgaaacgacttatg |
10434296 |
T |
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| Q |
118 |
tttagattttatttgtggcaagttctacagtgaaccttcttgataggcggtccataatggactgacacttaaaaattgcacaaaatatcaacggctctcc |
217 |
Q |
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| T |
10434295 |
tttagattttatttgtggcaagttctacagtgaaccttcttgataggcagtccataatggactgacacttaaaaattgcacaaaatatcaacggctctcc |
10434196 |
T |
|
| Q |
218 |
gtccttcagaagtagatgatcatggtcctcttcatcctcacaactaagacaatgacttgatcgatgtcaatttgacaaaagcaatgacaaacacatacta |
317 |
Q |
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| T |
10434195 |
gtccttcagaagtagatgatcatggtcctcttcatcctcacaactaagacaatgacttgatcgatgtcaatttgacaaaagcaatgacaaacacatacta |
10434096 |
T |
|
| Q |
318 |
gttatgttttgaagagcatttctcttgtttttgcgaaactgacaccaattagtcattgtctcagactttacagcaagaaaaaccataaacttttacttct |
417 |
Q |
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| T |
10434095 |
gttatgttttgaggagcatttctcttgtttttgcgaaactgacaccaattagtcattgtctcagactttacagcaagaaaaaccataaacttttacttct |
10433996 |
T |
|
| Q |
418 |
aggagtcgacgtaacataagtcatcattggagtttcatacagtttcaaataatgttccacggtgtagaagttgcctcagtcagttgcatcaaaagctaga |
517 |
Q |
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| T |
10433995 |
aggagtcgacgtaacgtaagtcatcattggagtttcatacagtttcaaataatgttccacggtgtagaagttgccttagtcagttgcatcaaaagctaga |
10433896 |
T |
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| Q |
518 |
taaagttccttctatcaaaaccatgtttcaatccccaaaccataagatgaaaaataaaggaaaagtgtctgttaacattttaaaaatatcacgaaattaa |
617 |
Q |
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| T |
10433895 |
taaagttccttctatcaaaaccatgtttcaatccccaaaccat-agttgaaaaataaaggaaaagtgtctgttaacattttaaaaatatcacgaaattaa |
10433797 |
T |
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| Q |
618 |
gtcttgagccttgaaaacatgtttttgtgctctaaatg |
655 |
Q |
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| T |
10433796 |
gtcttgagccttgaaaacatgtttttgtgctctaaatg |
10433759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 38638219 - 38638177
Alignment:
| Q |
264 |
agacaatgacttgatcgatgtcaatttgacaaaagcaatgaca |
306 |
Q |
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| T |
38638219 |
agacaatgacttgatcgatgtcaatttgtcaaaacaaatgaca |
38638177 |
T |
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