View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_4 (Length: 657)
Name: NF11073_low_4
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 39600626 - 39601010
Alignment:
| Q |
13 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagtac |
112 |
Q |
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| T |
39600626 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagtac |
39600725 |
T |
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| Q |
113 |
tatgctaaaagg--attcaaagt--ttattcattttctgactcatgaatgttttttgttcacaatctgcagccatttggaactgttcctgtaataaaaga |
208 |
Q |
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| T |
39600726 |
tatgctaaaagtttatttattttgattattcattttctgactcatgcatgttttttgttcataatctgcagccttttggaactgttcctgtaataaaaga |
39600825 |
T |
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| Q |
209 |
tggagactataccctttatggttaagacatcttgaccccatgtcatgctttttcaacttcttgtttttccctttttgttacttctcttatctacatattt |
308 |
Q |
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| T |
39600826 |
tggagactataccctttatggttaaaacatcttgaccccatgtcatactttttctacttcttgttttt----------------------ctacatattt |
39600903 |
T |
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| Q |
309 |
gatatggtcacagcttgtaaacactttaaacaagggttttacgttggttataaatataaaatatgacaaacaaataatagacatttgcataactaaattg |
408 |
Q |
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| T |
39600904 |
gatatggtcacagcttgtaaacactttaaacaagggttttatgttggttataaatataaaatatgacaaacaaattatagacatttgcataacttaattg |
39601003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 444 - 639
Target Start/End: Original strand, 39601019 - 39601214
Alignment:
| Q |
444 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaaga |
543 |
Q |
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| T |
39601019 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaaga |
39601118 |
T |
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| Q |
544 |
aaagggccttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtttccttcactact |
639 |
Q |
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| T |
39601119 |
aaagggtcttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtgtcctacactact |
39601214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 444 - 639
Target Start/End: Original strand, 39611840 - 39612035
Alignment:
| Q |
444 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaaga |
543 |
Q |
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| T |
39611840 |
tgttttcatctatttgtgcagaatctagggcaataatgagatattatgcagaaaaatatagatctcaaggggttgagttgctaggaaagacaatagaaga |
39611939 |
T |
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| Q |
544 |
aaagggccttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtttccttcactact |
639 |
Q |
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| T |
39611940 |
aaagggtcttgtggaacaatggttagaagttgaagcacacaactttaacccaccagcttacaacttggtcattcatgttttgtttccttcactact |
39612035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 39611215 - 39611312
Alignment:
| Q |
162 |
tttgttcacaatctgcagccatttggaactgttcctgtaataaaagatggagactataccctttatggttaagacatcttgaccccatgtcatgctttt |
260 |
Q |
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| T |
39611215 |
tttgttcataatctgcagccatttggaaatgttcctgttattaaagatggagactataccctttatggttaa-acatcttgaccccatgtcatgctttt |
39611312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 39611067 - 39611160
Alignment:
| Q |
13 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtt |
106 |
Q |
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| T |
39611067 |
gagaaggaaatagaatttgaggttgtccctattaatgtcttgaagggtgaacacaaggatcctgagtacctcaaattacaggttcatgtttgtt |
39611160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 460 - 595
Target Start/End: Original strand, 17647057 - 17647192
Alignment:
| Q |
460 |
tgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaa |
559 |
Q |
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|||||||||||||||||| | || |||||||||||||| || | | ||||||| ||| || || ||||||||||||||||||| ||| |||||||| |
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| T |
17647057 |
tgcagaatctagggcaatcctaaggtactatgctgaaaagtacaaaaatcaagggactgatttgcttggaaagacaatagaagaaaggggtcttgtggag |
17647156 |
T |
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| Q |
560 |
caatggttagaagttgaagcacataatttccaccca |
595 |
Q |
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|||||| ||||||||||||||||||| ||| ||||| |
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| T |
17647157 |
caatggctagaagttgaagcacataacttcaaccca |
17647192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 595
Target Start/End: Complemental strand, 17573025 - 17572955
Alignment:
| Q |
525 |
taggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccaccca |
595 |
Q |
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| T |
17573025 |
taggaaagacggtagaagaaaggggtcttgtggaacaatggcttgaagtggaagcacataactttcaccca |
17572955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 34774287 - 34774353
Alignment:
| Q |
574 |
tgaagcacataatttccacccatcagcatacaa-tttgacctgtcatgttttgtttccttcactact |
639 |
Q |
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| T |
34774287 |
tgaagcacatatcttccacccaccagcatacaattttgacctatcatgttttgcgtccttcactact |
34774353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 24646986 - 24646944
Alignment:
| Q |
352 |
ttggttataaatataaaatatgacaaacaaataatagacattt |
394 |
Q |
| |
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||||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
24646986 |
ttggttataaatatataatatgacaaataaattatagacattt |
24646944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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