View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11073_low_5 (Length: 636)

Name: NF11073_low_5
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11073_low_5
NF11073_low_5
[»] chr1 (24 HSPs)
chr1 (10-618)||(44453465-44454073)
chr1 (4-103)||(32813248-32813347)
chr1 (4-95)||(44548376-44548467)
chr1 (4-95)||(51898683-51898774)
chr1 (1-95)||(2581924-2582018)
chr1 (10-95)||(38632327-38632412)
chr1 (4-52)||(48489352-48489400)
chr1 (4-103)||(5959000-5959099)
chr1 (34-103)||(50591030-50591099)
chr1 (4-95)||(8346388-8346479)
chr1 (4-95)||(9474876-9474967)
chr1 (4-95)||(27564735-27564826)
chr1 (4-95)||(38595163-38595254)
chr1 (4-95)||(47452320-47452411)
chr1 (5-95)||(37649207-37649297)
chr1 (10-95)||(48716288-48716373)
chr1 (4-95)||(3000328-3000419)
chr1 (4-103)||(6260871-6260970)
chr1 (4-103)||(37926438-37926537)
chr1 (4-95)||(50630467-50630558)
chr1 (4-82)||(45044560-45044638)
chr1 (34-103)||(41608523-41608592)
chr1 (34-103)||(47748444-47748512)
chr1 (4-52)||(13414813-13414861)
[»] chr2 (21 HSPs)
chr2 (4-103)||(17820004-17820103)
chr2 (4-103)||(26891504-26891603)
chr2 (4-95)||(40701487-40701578)
chr2 (1-95)||(4060694-4060788)
chr2 (4-91)||(3439992-3440079)
chr2 (4-95)||(7465735-7465826)
chr2 (4-95)||(10249382-10249473)
chr2 (4-95)||(17473029-17473120)
chr2 (4-95)||(28863464-28863555)
chr2 (4-95)||(32505648-32505739)
chr2 (1-52)||(3737995-3738046)
chr2 (4-95)||(5574488-5574579)
chr2 (4-95)||(9058489-9058580)
chr2 (4-95)||(33436100-33436191)
chr2 (4-103)||(40613902-40614001)
chr2 (34-103)||(43490122-43490191)
chr2 (34-103)||(45097765-45097834)
chr2 (4-95)||(13438352-13438443)
chr2 (4-95)||(28381655-28381746)
chr2 (4-103)||(42257194-42257293)
chr2 (34-82)||(2997517-2997565)
[»] chr3 (20 HSPs)
chr3 (4-95)||(17470414-17470505)
chr3 (4-103)||(26141532-26141631)
chr3 (4-95)||(49607423-49607514)
chr3 (4-103)||(48375706-48375805)
chr3 (4-95)||(54868895-54868986)
chr3 (4-103)||(11907372-11907471)
chr3 (4-95)||(53982020-53982111)
chr3 (4-93)||(26754706-26754795)
chr3 (4-100)||(52629304-52629400)
chr3 (4-95)||(14623839-14623930)
chr3 (4-95)||(27714891-27714982)
chr3 (4-95)||(30801733-30801824)
chr3 (4-95)||(33644209-33644300)
chr3 (4-95)||(48587091-48587182)
chr3 (4-52)||(1758456-1758504)
chr3 (4-100)||(25395333-25395429)
chr3 (4-103)||(33118851-33118950)
chr3 (39-95)||(11095388-11095444)
chr3 (4-104)||(31456689-31456789)
chr3 (35-103)||(45058584-45058651)
[»] scaffold0237 (1 HSPs)
scaffold0237 (4-95)||(4038-4129)
[»] chr6 (12 HSPs)
chr6 (4-95)||(29857836-29857927)
chr6 (4-95)||(17598563-17598654)
chr6 (4-95)||(32869687-32869778)
chr6 (34-103)||(15508054-15508123)
chr6 (34-103)||(15990072-15990141)
chr6 (34-103)||(30341390-30341459)
chr6 (4-95)||(22880658-22880749)
chr6 (4-103)||(31976249-31976348)
chr6 (4-52)||(12732534-12732582)
chr6 (4-52)||(23128127-23128175)
chr6 (4-82)||(11427640-11427718)
chr6 (4-92)||(31953030-31953118)
[»] chr5 (21 HSPs)
chr5 (4-103)||(35943892-35943991)
chr5 (4-103)||(6679699-6679798)
chr5 (4-95)||(35785208-35785299)
chr5 (4-103)||(26720517-26720616)
chr5 (4-103)||(26990266-26990365)
chr5 (4-103)||(38296204-38296303)
chr5 (4-95)||(2740283-2740374)
chr5 (4-95)||(18520884-18520975)
chr5 (4-95)||(40145416-40145507)
chr5 (1-95)||(14831823-14831917)
chr5 (34-103)||(3921295-3921364)
chr5 (11-78)||(10227901-10227968)
chr5 (4-95)||(13811661-13811752)
chr5 (4-103)||(28177776-28177875)
chr5 (4-95)||(33149638-33149729)
chr5 (34-103)||(2252198-2252267)
chr5 (4-51)||(21370057-21370104)
chr5 (4-95)||(36732942-36733033)
chr5 (13-95)||(41470425-41470507)
chr5 (10-95)||(42414308-42414393)
chr5 (4-52)||(31009040-31009088)
[»] chr4 (27 HSPs)
chr4 (4-95)||(6034053-6034144)
chr4 (34-103)||(55079744-55079813)
chr4 (11-95)||(50526178-50526262)
chr4 (4-95)||(3481663-3481754)
chr4 (4-95)||(29234245-29234336)
chr4 (4-95)||(41236356-41236447)
chr4 (34-103)||(32766959-32767028)
chr4 (4-95)||(11511462-11511553)
chr4 (4-95)||(28480268-28480359)
chr4 (4-95)||(28481143-28481234)
chr4 (4-95)||(28482018-28482109)
chr4 (4-95)||(29239895-29239986)
chr4 (4-95)||(48183049-48183140)
chr4 (4-95)||(50052428-50052519)
chr4 (34-103)||(19670746-19670815)
chr4 (4-81)||(29977908-29977985)
chr4 (4-95)||(480447-480538)
chr4 (33-103)||(44536775-44536844)
chr4 (33-103)||(50813921-50813991)
chr4 (34-103)||(18924525-18924594)
chr4 (34-103)||(29547989-29548058)
chr4 (34-103)||(47986209-47986278)
chr4 (10-95)||(54473539-54473624)
chr4 (34-103)||(55475192-55475261)
chr4 (34-82)||(17983773-17983821)
chr4 (4-52)||(18769047-18769095)
chr4 (12-100)||(53352574-53352661)
[»] chr8 (17 HSPs)
chr8 (4-95)||(37038488-37038579)
chr8 (10-95)||(504127-504212)
chr8 (4-95)||(14547931-14548022)
chr8 (34-103)||(16383378-16383447)
chr8 (34-103)||(34307217-34307286)
chr8 (15-103)||(17443826-17443914)
chr8 (4-95)||(12831056-12831147)
chr8 (4-95)||(15197342-15197433)
chr8 (4-95)||(23122597-23122688)
chr8 (4-95)||(34012296-34012387)
chr8 (4-104)||(5957830-5957930)
chr8 (4-52)||(9122237-9122285)
chr8 (4-95)||(1179940-1180031)
chr8 (4-95)||(4854863-4854954)
chr8 (4-50)||(15258929-15258975)
chr8 (34-103)||(24307823-24307892)
chr8 (4-52)||(38229480-38229528)
[»] chr7 (29 HSPs)
chr7 (4-95)||(3784004-3784095)
chr7 (4-103)||(18207181-18207279)
chr7 (4-103)||(39255924-39256022)
chr7 (4-103)||(41423683-41423782)
chr7 (34-103)||(41915742-41915811)
chr7 (4-95)||(8080383-8080474)
chr7 (4-95)||(36361913-36362004)
chr7 (4-95)||(38837226-38837317)
chr7 (6-103)||(12310907-12311002)
chr7 (4-88)||(3694383-3694467)
chr7 (35-103)||(22343362-22343430)
chr7 (4-104)||(35522876-35522976)
chr7 (4-95)||(3434571-3434662)
chr7 (4-95)||(7389398-7389489)
chr7 (4-95)||(19329851-19329942)
chr7 (4-95)||(19436187-19436278)
chr7 (4-103)||(36208174-36208273)
chr7 (4-95)||(36362035-36362126)
chr7 (4-95)||(40957716-40957807)
chr7 (9-103)||(46374807-46374901)
chr7 (4-52)||(27744309-27744357)
chr7 (4-95)||(4999514-4999605)
chr7 (36-103)||(38044198-38044265)
chr7 (4-95)||(38267049-38267140)
chr7 (10-52)||(16374830-16374872)
chr7 (12-81)||(2318251-2318320)
chr7 (34-103)||(32564456-32564525)
chr7 (39-95)||(10343598-10343654)
chr7 (4-92)||(35137545-35137633)
[»] scaffold1268 (1 HSPs)
scaffold1268 (4-95)||(929-1020)
[»] scaffold1267 (1 HSPs)
scaffold1267 (4-95)||(929-1020)
[»] scaffold0316 (1 HSPs)
scaffold0316 (4-52)||(17106-17154)
[»] scaffold0321 (1 HSPs)
scaffold0321 (68-103)||(10173-10208)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-88)||(152514-152587)


Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Complemental strand, 44454073 - 44453465
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataacttcttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  44454073 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataacttcttaa 44453974  T
Q  110 cttgtgtacgttgttttttcaacactatacaactttaatttaccctccnnnnnnnnnnnnnnnnnnnnnnntatccttgaatcaacttggcaaaaaagaa 209  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||||    
T  44453973 tttgtgtatgttgttttttcaacactatacaactttaatttaccctccaaatttaaaaaaagaaaacaaaatatccttgaatcaacttggcaaaaaagaa 44453874  T
Q  210 atatcaactctttctcactctaatatagtgcattacaagaaagataatagagacaagcaaagttgatcctccaagaatcaaaggtggacaaggttgccat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44453873 atatcaactctttctcactctaatatagtgcattacaagaaagataatagagacaagcaaagttgatcctccaagaatcaaaggtggacaaggttgccat 44453774  T
Q  310 ggttttctaggacgtctcttcttaacaggagcattttcctcttcactcttatgatctgtaacctttacttcttctcttgcactttgttctggttcttcta 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44453773 ggttttctaggacgtctcttcttaacaggagcattttcctcttcactcttatgatctgtaacctttacttcttctcttgaactttgttctggttcttcta 44453674  T
Q  410 taatgctacttgcaccctcttcttccttcacttcttctattcccatcccactcagtactccttttgctatttccgtttttggcatcactattctcaacac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44453673 taatgctacttgcaccctcttcttccttcacttcttctattcccatcccactcagtactccttttactatttccgtttttggcatcactattctcaacac 44453574  T
Q  510 ttcttcctcttcgtaatacttagctttgatcttatccaaaacaactccattagggattttaaacttctttctaaatccttttattttcagctctttcttg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44453573 ttcttcctcttcgtaatacttagctttgatcttatccaaaacaactccattagggattttaaacttctttctaaatccttttattttcagctctttcttg 44453474  T
Q  610 aatggtatc 618  Q
    |||||||||    
T  44453473 aatggtatc 44453465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 32813347 - 32813248
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||| |||| || ||||| |||||||||||||| | ||| ||||  ||||||||||||||||| | |||||||||| |||||||    
T  32813347 agaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 32813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 44548376 - 44548467
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||||| ||  ||||||||||||||||||| ||||||||||    
T  44548376 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgta 44548467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 51898683 - 51898774
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||||| ||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgta 51898774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2582018 - 2581924
Alignment:
Q  1 aaaagaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  2582018 aaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 2581924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 38632327 - 38632412
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||| ||| ||||||| || || |||||||||||||| | | | |||| |||||||||||||||||| ||||||||||||    
T  38632327 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgta 38632412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 48489400 - 48489352
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgt 48489352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 5959000 - 5959099
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| ||| |||||| ||| ||||  | |||||||||||||||||||| | ||| | ||||||||||||||||| ||| ||||| |||||| |||||||    
T  5959000 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataact 5959099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 50591030 - 50591099
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  50591030 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 50591099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 8346388 - 8346479
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||||||  || ||||||| || || |||||||||||||| | ||| | ||  |||||||||||||||||||||| |||||||    
T  8346388 agaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgta 8346479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 9474876 - 9474967
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  9474876 agaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 9474967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 27564735 - 27564826
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| |  || |||||||||||||| | ||| | || |||||||||||||||||| | ||||||||||    
T  27564735 agaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgta 27564826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 38595254 - 38595163
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||  ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||||||||| ||||||    
T  38595254 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgta 38595163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 47452320 - 47452411
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || ||| |||||||||| | ||| | ||  |||||||| |||||||| ||||||||||||    
T  47452320 agaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgta 47452411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 37649297 - 37649207
Alignment:
Q  5 gaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||| |||||||||| || || ||||| ||||| |||||||||||||| | ||| | ||   |||||||||||||||||| ||||||||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgta 37649207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 48716288 - 48716373
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||| ||| ||||||| || || |||||||||||||| | | | | ||  ||||||||||||||||| ||||||||||||    
T  48716288 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgta 48716373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 3000419 - 3000328
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||  ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||| ||||||    
T  3000419 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgta 3000328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 6260970 - 6260871
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||| || ||| ||||||| ||||||||| |||||||| | | ||| || || |||||||| |||||||| | | ||||| || |||||||    
T  6260970 agaaaatgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataact 6260871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 37926438 - 37926537
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| ||| |||||  |||||||| ||  |||| |||||||||||| | | ||| |||| || ||||||||||||||||| | |||||||| |||||||    
T  37926438 agaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataact 37926537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 50630558 - 50630467
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||||  ||  | ||||||||||||||| ||| ||||||||    
T  50630558 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgta 50630467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 45044560 - 45044638
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaa 82  Q
    |||||||||| ||||| ||| |||| ||  | ||||||||||||||||||| ||| | ||  |||||||||||||||||    
T  45044560 agaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaa 45044638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 41608523 - 41608592
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| |  || | ||| ||||||||||||||||| | ||| |||||| |||||||    
T  41608523 ccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataact 41608592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 47748512 - 47748444
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||| ||| ||| | ||| ||||||||||||||||| ||| | |||||| |||||||    
T  47748512 ccacatgtcagatttttatatgggtgtcaag-ggtgtattgccacctaagggtatttatgtatcataact 47748444  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 13414861 - 13414813
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||||||||||||| ||||||| || || ||| ||||||||||    
T  13414861 agaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgt 13414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 17820004 - 17820103
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| | ||| | ||| |||||||||||||||| || |||||||||| |||||||    
T  17820004 agaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataact 17820103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 26891504 - 26891603
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||  | | ||||||| |||||||||||||||||||| | ||| |  || ||||||||||||||||| |||| ||||||| |||||||    
T  26891504 agaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataact 26891603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 40701578 - 40701487
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||| ||| |||||||||| || |||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||    
T  40701578 agaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgta 40701487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4060788 - 4060694
Alignment:
Q  1 aaaagaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||| ||||||| || |||||||||||||| || |||||||||||||| | | | | || |||||||||| ||||||| ||||||||||||    
T  4060788 aaaagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgta 4060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 3440079 - 3439992
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtcta 91  Q
    |||||||||||||||| ||| ||||||||| ||||||| |||||||||| | ||| |  ||  |||||||||||||||| ||||||||    
T  3440079 agaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtcta 3439992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 7465735 - 7465826
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || || |||||||||||||| | ||| | ||  |||||||||||| |||| ||||||||||||    
T  7465735 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgta 7465826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 10249382 - 10249473
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | || |||||||||| ||||||| ||||||||||||    
T  10249382 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgta 10249473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 17473120 - 17473029
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | ||  |||||||||||| |||| ||||||||||||    
T  17473120 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgta 17473029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 28863555 - 28863464
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  28863555 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 28863464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 32505648 - 32505739
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | || |||||||||| ||||||| ||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgta 32505739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3738046 - 3737995
Alignment:
Q  1 aaaagaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||||||||||||||||| ||| ||||| | ||||||||||||||||||||    
T  3738046 aaaagaaaatgtgcttgtgcggggtccacatgaccacatgtcagatttttgt 3737995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 5574488 - 5574579
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||| | | ||| | ||  |||||||||||||||||  |||||||||||    
T  5574488 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgta 5574579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 9058580 - 9058489
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||| | || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  9058580 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 9058489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 33436100 - 33436191
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || ||| |||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  33436100 agaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 33436191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 40613902 - 40614001
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||| |||| ||  |||| |||||||||||||| | ||| | ||  ||||||||||||||||| | |||||||||| |||||||    
T  40613902 agaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 40614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 43490191 - 43490122
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||| ||||||| ||||| |||||| |||||||    
T  43490191 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataact 43490122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 45097765 - 45097834
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||||| ||| | ||| | ||||||||||||||| | ||| |||||| |||||||    
T  45097765 ccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataact 45097834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 13438443 - 13438352
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  | ||||||| ||||||| ||||||||||||    
T  13438443 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgta 13438352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28381655 - 28381746
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||  |||| || || || |||||||||||||| | ||| |  | |||||||||||||||||| ||||||||||||    
T  28381655 agaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgta 28381746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 42257293 - 42257194
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||| |||| ||  |||| |||||||||||| | | ||| | ||  | ||||||||||||||||| |||||||||| |||||||    
T  42257293 agaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataact 42257194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 2997517 - 2997565
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaa 82  Q
    ||||||||||||||||||| | ||| | ||| |||||||||||||||||    
T  2997517 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 2997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 17470505 - 17470414
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || || |||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||    
T  17470505 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgta 17470414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 26141532 - 26141631
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||||||| |||| || ||||| |||||||||||||| | ||| ||||  ||||||||||||||||| | |||||||||| |||||||    
T  26141532 agaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 26141631  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 49607514 - 49607423
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||||||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  49607514 agaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 49607423  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 48375706 - 48375805
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||| ||| |||| || |||||| ||||||||||||||| | | || || ||||||||| ||||||| |||||||||| | |||||||    
T  48375706 agaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatcataact 48375805  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 54868895 - 54868986
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||| ||| |||||||||| || |||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||    
T  54868895 agaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgta 54868986  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 11907471 - 11907372
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||| ||| ||||  | |||||||||||||||||||| |  || || ||  |||||||| ||||||| |||||||||||| |||||||    
T  11907471 agaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataact 11907372  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 53982111 - 53982020
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  53982111 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 53982020  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 26754795 - 26754706
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatg 93  Q
    |||||||||||||||| ||| |||| || |||||||||||||||||||| | | | |  |  ||||||||||||||||| ||||||||||    
T  26754795 agaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatg 26754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 52629400 - 52629304
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacata 100  Q
    ||||| |||||||||  ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| |||||||||||| ||||    
T  52629400 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 14623839 - 14623930
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||| | ||||| | | |||||||||||||||| | | ||| | ||| ||||||||||||||||| | ||||||||||    
T  14623839 agaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgta 14623930  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 27714891 - 27714982
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||| | || || |||||||||||||| | ||| | ||  |||||||| |||||||||||||||||||||    
T  27714891 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgta 27714982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 30801733 - 30801824
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||||||||||||| ||||  | || |||||||| |||||||| | ||||| ||  ||||||||  ||||||| ||||||||||||    
T  30801733 agaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgta 30801824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 33644300 - 33644209
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  |||||||||||||| || ||||||||||||    
T  33644300 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgta 33644209  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 48587091 - 48587182
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||| |||||| ||||||||||| || || |||||||||||| | ||||| | ||  ||||||||||||||||| ||| ||||||||    
T  48587091 agaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgta 48587182  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 1758456 - 1758504
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||| ||||||||  |||||||||||| |||||||||||||||    
T  1758456 agaaaatgtgtttgtgtggagtccacgtaaccatatgtcagatttttgt 1758504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 25395333 - 25395429
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacata 100  Q
    |||||||||| ||||||||| || |  || ||||||||||||||||||| | ||||||||| | ||||| ||||| ||| | ||| |||||| ||||    
T  25395333 agaaaatgtgtttgtgtggggtctatatagccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcata 25395429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 33118851 - 33118950
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||| || || ||||||||||| || || ||||| |||||||| | ||| | ||  ||||||||| ||||||| |||||||||||| |||||||    
T  33118851 agaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataact 33118950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 11095388 - 11095444
Alignment:
Q  39 tgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  11095388 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 11095444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 31456789 - 31456689
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||| ||||| | || || |||||||||||||| | ||| | ||  ||||||||||| ||||  |||||||||||| ||| |||    
T  31456789 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T
Q  104 t 104  Q
    |    
T  31456689 t 31456689  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 45058584 - 45058651
Alignment:
Q  35 cacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||| | | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  45058584 cacatgtcagatttttatgtgggtgtcaag-ggtgtattgccacctaagggtgtttatgtatcataact 45058651  T

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Target: scaffold0237 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 4129 - 4038
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||| || |||||||||||||| || |||||||||||||| | ||| |||| ||||||||||||| |||||||||||||||||    
T  4129 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgta 4038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 29857927 - 29857836
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||| || |||||||||||||| || |||||||||||||| | ||| |||| ||||||||||||| |||||||||||||||||    
T  29857927 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgta 29857836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 17598654 - 17598563
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | || || ||||||||||||||| ||||||||||||    
T  17598654 agaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgta 17598563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 32869778 - 32869687
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  32869778 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 32869687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 15508054 - 15508123
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  15508054 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 15508123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 15990072 - 15990141
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  15990072 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 15990141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 30341390 - 30341459
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  30341390 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 30341459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 22880658 - 22880749
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || ||||||| |||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  22880658 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 22880749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 31976348 - 31976249
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||| | || || ||||| |||||||||||||| | ||| ||||  ||| ||||||||||||| | |||||||||| |||||||    
T  31976348 agaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataact 31976249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 12732582 - 12732534
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||||||||||| |||||||||||| || |||| ||||||||||||||    
T  12732582 agaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgt 12732534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 23128127 - 23128175
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||| |||||||||||||||||||||| || || ||||||||||||||    
T  23128127 agaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgt 23128175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 11427718 - 11427640
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaa 82  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | ||  | |||||||||||||||    
T  11427718 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaa 11427640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 31953030 - 31953118
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctat 92  Q
    ||||| |||| ||||||| | ||||| | | |||||||||||||||| | | ||| | ||| ||||||||||||||||| | |||||||    
T  31953030 agaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctat 31953118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 35943892 - 35943991
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||| | ||| | ||  | ||||||||||||||| |||||||||||| |||||||    
T  35943892 agaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataact 35943991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 6679798 - 6679699
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||| ||||| ||| |||| || ||||| |||||||||||||| | ||| | || |||||||||||||||||||| |||||||||| |||||||    
T  6679798 agaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataact 6679699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 35785299 - 35785208
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||| |||||||||||||| || |||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||    
T  35785299 agaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgta 35785208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 26720616 - 26720517
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| |||||||| ||  |||| |||||||||||| | ||||| ||||  ||||||||||||||||| | |||||||||| |||||||    
T  26720616 agaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 26720517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 26990365 - 26990266
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| |||||||| ||  |||| |||||||||||| | ||||| ||||  ||||||||||||||||| | |||||||||| |||||||    
T  26990365 agaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 26990266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 38296303 - 38296204
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| ||||||||||| ||||||||||| | || |||| ||||||||| | ||||||||||||||||||| |||||||    ||||||||| |||||||    
T  38296303 agaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataact 38296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 2740374 - 2740283
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| | ||||||||||    
T  2740374 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgta 2740283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 18520884 - 18520975
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  18520884 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 18520975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 40145507 - 40145416
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | | | ||||  ||||||||||||||||| ||||||||||||    
T  40145507 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgta 40145416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14831917 - 14831823
Alignment:
Q  1 aaaagaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||| |||||||||| ||||||||||| || || |||||||||||| | | ||| | ||  |||||||||||||||||  |||||||||||    
T  14831917 aaaagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgta 14831823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 3921295 - 3921364
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  3921295 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 3921364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 10227901 - 10227968
Alignment:
Q  11 gtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccac 78  Q
    |||||||||||| |||||| ||| |||||||||||||||||||| ||| | ||| | |||||||||||    
T  10227901 gtgcttgtgtggaatccacataatcacatgtcagatttttgtatcggtgtcaagggatgtattgccac 10227968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 13811752 - 13811661
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  | ||||||||||||||| ||||||||||||    
T  13811752 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgta 13811661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 28177875 - 28177776
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||| ||||| ||| |||| || ||||| |||||||||||||| | ||| | ||  ||||||||||||||||| | |||||||||| |||||||    
T  28177875 agaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 28177776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 33149638 - 33149729
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || ||||| |||||||| | ||| | ||  |||||||| |||||||| ||||||||||||    
T  33149638 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgta 33149729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 2252198 - 2252267
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| | ||| |||||| |||||||    
T  2252198 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataact 2252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21370104 - 21370057
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttg 51  Q
    |||||||||| ||||| ||| ||||||| |||||||||||||||||||    
T  21370104 agaaaatgtgtttgtgcggggtccacgtgaccacatgtcagatttttg 21370057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 36732942 - 36733033
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || |  |||||||||||||| | ||| | ||  |||||||||| |||||| ||||||||||||    
T  36732942 agaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgta 36733033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 41470425 - 41470507
Alignment:
Q  13 gcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||||| ||| ||||||| || || |||||||||||| |||   | ||||  | ||||||||||||||||||||||||||||    
T  41470425 gcttgtgcggggtccacgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgta 41470507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 42414308 - 42414393
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||| ||| ||||| | || || |||||||||||||| | ||| | ||  ||||||||||||||||  ||||||||||||    
T  42414308 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgta 42414393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 31009088 - 31009040
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||| |||||||||| ||||||||||| || || ||||||||||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgt 31009040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 6034144 - 6034053
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || ||||||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  6034144 agaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 6034053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 55079744 - 55079813
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||| |||||| |||||||    
T  55079744 ccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataact 55079813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 50526178 - 50526262
Alignment:
Q  11 gtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||||||| || |||||||| ||||| |||||||||||||| | ||| | ||  ||||||||||||||||||| ||||||||||    
T  50526178 gtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgta 50526262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 3481754 - 3481663
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || |  |||||||||||||| | ||| | ||   |||||||||||||||||||||||||||||    
T  3481754 agaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgta 3481663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 29234245 - 29234336
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || ||||||||||||||  |||||| ||  |||||||||||| |||| ||||||||||||    
T  29234245 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgta 29234336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 41236447 - 41236356
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | | | | || |||||||||||||||||| ||||||||||||    
T  41236447 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgta 41236356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 32767028 - 32766959
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||||| ||| | ||| |||||||||||||||||  |||| |||||| |||||||    
T  32767028 ccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataact 32766959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 11511462 - 11511553
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||| | | ||| | ||  ||||||||||||||||| ||||||||||||    
T  11511462 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgta 11511553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28480268 - 28480359
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||||||| ||||| | || ||||||||||||||||| |  || |||||| |||||||| ||||||| | ||||||||||    
T  28480268 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgta 28480359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28481143 - 28481234
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||||||| ||||| | || ||||||||||||||||| |  || |||||| |||||||| ||||||| | ||||||||||    
T  28481143 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgta 28481234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28482018 - 28482109
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||||||| ||||| | || ||||||||||||||||| |  || |||||| |||||||| ||||||| | ||||||||||    
T  28482018 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgta 28482109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 29239986 - 29239895
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || || ||| |||||||||| | | | | ||  ||||||||||||||||| ||||||||||||    
T  29239986 agaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgta 29239895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 48183049 - 48183140
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||| ||| ||||||||||||    
T  48183049 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgta 48183140  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 50052428 - 50052519
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| | ||||||||||    
T  50052428 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgta 50052519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 19670746 - 19670815
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| |  || | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  19670746 ccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 19670815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 29977985 - 29977908
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccaccta 81  Q
    ||||| |||||||||||||| ||||  | || || |||||||||||||| | ||| ||||| ||||||||||||||||    
T  29977985 agaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 480447 - 480538
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||  ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||| ||||||| ||||||||||||    
T  480447 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgta 480538  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 44536775 - 44536844
Alignment:
Q  33 accacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||||||| | | | | ||| |||||||||||||||||| |||| |||||| |||||||    
T  44536775 accacatgtcagatttttgtgtggatgtcaag-ggtgtattgccacctaaaagtgtttatgtatcataact 44536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 50813921 - 50813991
Alignment:
Q  33 accacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||||||| | ||| | ||| |||||||| ||||||||  |||| |||||| |||||||    
T  50813921 accacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataact 50813991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 18924525 - 18924594
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | | ||| ||| ||||||||||||||||| ||| | |||| | |||||||    
T  18924525 ccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataact 18924594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 29547989 - 29548058
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| | ||||||||||||||| | ||| |||||| |||||||    
T  29547989 ccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataact 29548058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 47986278 - 47986209
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | | | | ||| | ||||||||||||||| ||||| |||||| |||||||    
T  47986278 ccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataact 47986209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 54473539 - 54473624
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||| ||| ||||||| || || ||| |||||||||| | ||| | ||  ||||||||| ||||||| ||||||||||||    
T  54473539 tgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgta 54473624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 55475261 - 55475192
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||  ||||||||||||||||| | ||| |||||| |||||||    
T  55475261 ccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataact 55475192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 17983773 - 17983821
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaa 82  Q
    ||||||||||||||||||| | ||| | ||| |||||||||||||||||    
T  17983773 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 17983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 18769047 - 18769095
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||| |||||||||||  || | ||||||||||||||||||||    
T  18769047 agaaaatgtgtttgtgtgggatttacatgaccacatgtcagatttttgt 18769095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 53352574 - 53352661
Alignment:
Q  12 tgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacata 100  Q
    |||||||| ||| ||||| |||| || |||||||||||||| ||||| ||||    ||||||| ||||||| |||||||||||| ||||    
T  53352574 tgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcata 53352661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 37038579 - 37038488
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||||| ||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgta 37038488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 504127 - 504212
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||| ||| ||||||| || || |||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||    
T  504127 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgta 504212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 14548022 - 14547931
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||||||||||| ||||||||||||    
T  14548022 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgta 14547931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 16383447 - 16383378
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  16383447 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 16383378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 34307286 - 34307217
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  34307286 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 34307217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 17443914 - 17443826
Alignment:
Q  15 ttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||| ||||| | || ||||||||||||||||| |  || |||||| |||||||| ||||||| | |||||||||| |||||||    
T  17443914 ttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataact 17443826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 12831147 - 12831056
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||| ||||||| ||||||||||||    
T  12831147 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgta 12831056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 15197433 - 15197342
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  |||||||||||||||||  |||||||||||    
T  15197433 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgta 15197342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 23122597 - 23122688
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||| || ||| ||||||| || || |||||||||||||| | ||| | || |||||||||||||| ||| ||||||||||||    
T  23122597 agaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgta 23122688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 34012296 - 34012387
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || ||||| |||||||| | ||| | ||  |||||||| |||||||| ||||||||||||    
T  34012296 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgta 34012387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 5957930 - 5957830
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||| ||||| ||||||||||| || || |||||||||||||| | ||| | ||  |||||||||||||||||   |||||||||| ||| |||    
T  5957930 agaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T
Q  104 t 104  Q
    |    
T  5957830 t 5957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 9122285 - 9122237
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  9122285 agaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgt 9122237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 1179940 - 1180031
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| || |||||| | || || |||||||||||||| | ||| | ||  |||||||| |||||||| ||||||||||||    
T  1179940 agaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgta 1180031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 4854863 - 4854954
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||||||  || |||| ||  |||||| |||||||||| | ||||| ||||  ||||||||||||||||| | ||||||||||    
T  4854863 agaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgta 4854954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 15258929 - 15258975
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagattttt 50  Q
    ||||||||||||||||  || ||||||| ||||||||||||||||||    
T  15258929 agaaaatgtgcttgtgcagggtccacgtgaccacatgtcagattttt 15258975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 24307823 - 24307892
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||| |||||||||||| | ||| | ||| | ||||||||||||||| ||||| |||||| |||||||    
T  24307823 ccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataact 24307892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 38229528 - 38229480
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||||||||   | |||||||| ||||||||||||||||||||    
T  38229528 agaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgt 38229480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 3784095 - 3784004
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||||||||||| | ||| | || || ||||||||||||||| ||||||||||||    
T  3784095 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgta 3784004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 18207279 - 18207181
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||||||| | |||||  |||| ||| |||||||||||| ||| | ||||||||||||||||||||| | |||||||||| |||||||    
T  18207279 agaaagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataact 18207181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 39255924 - 39256022
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| ||| |||||||||  |||||||  |||| |||||||||||||||| ||||| ||| ||||||||||||||||| | |||||||||| |||||||    
T  39255924 agaaagtgttcttgtgtggagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataact 39256022  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 41423782 - 41423683
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||| |||||||  |||||| |||| |||||||||||||||||||| || || | |||||||||||| ||| |||| | |||||||||| |||||||    
T  41423782 agaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataact 41423683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 41915811 - 41915742
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  41915811 ccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 41915742  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 8080383 - 8080474
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||| | ||||| | ||  ||||||||||||||||| ||||||||||||    
T  8080383 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgta 8080474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 36361913 - 36362004
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || || |||||||||||||| | ||| | ||  | ||||||||||||||| ||||||||||||    
T  36361913 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgta 36362004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 38837317 - 38837226
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| ||||| |  |  ||||||||||||||||| ||||||||||||    
T  38837317 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgta 38837226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 12311002 - 12310907
Alignment:
Q  6 aaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||   |||||||||| |||||||||||||||||||||| | |||  |||  | |||| |||||||| |||||||||||| |||||||    
T  12311002 aaaatgtgcttgttcaggatccacgtgaccacatgtcagatttttgtatggatatccaga--tatatttccacctaagggtgtctatgtatcataact 12310907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 3694467 - 3694383
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgt 88  Q
    ||||| |||||||||| ||||||||| | || || |||||||||||||| | ||| |||| |||||||||| ||||||| |||||    
T  3694467 agaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgt 3694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 22343430 - 22343362
Alignment:
Q  35 cacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||||| | ||| | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  22343430 cacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 22343362  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 35522976 - 35522876
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||| |||||||||| ||||||||  |  |||| |||||||||||||| | ||| ||||  ||||||||||||| ||| | |||||||||| |||||||    
T  35522976 agaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T
Q  104 t 104  Q
    |    
T  35522876 t 35522876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 3434662 - 3434571
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||||||||| || || |||||| ||||||| | ||| | ||  ||||||||||||||||| | ||||||||||    
T  3434662 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgta 3434571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 7389489 - 7389398
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||   |||||||||||||||| ||||||||||||    
T  7389489 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgta 7389398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 19329942 - 19329851
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| |  || |||||||||||||| | ||| | || |||||||||||||||||| | ||||||||||    
T  19329942 agaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgta 19329851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 19436187 - 19436278
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| ||||||| || ||||||||||| || || |||||||||||||| | ||| | || |||||||||| ||||||| | ||||||||||    
T  19436187 agaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgta 19436278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 36208273 - 36208174
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||  || ||||||| |||||||||||| ||||||| | ||| | ||    |||||| |||||||| |||||||||||| |||||||    
T  36208273 agaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataact 36208174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 36362126 - 36362035
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||||||| ||||||| || || |||||||||||||| | ||| | ||  | |||||| |||||||| ||||||||||||    
T  36362126 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgta 36362035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 40957807 - 40957716
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||  ||||||||||| || || |||||||||||||| | ||||| ||   ||||||||||||||||  |||||||||||    
T  40957807 agaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgta 40957716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 46374807 - 46374901
Alignment:
Q  9 atgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||| ||| |||| ||  |||| |||||||||||||| | ||| ||||  ||||| ||||||||||| | |||||||||| |||||||    
T  46374807 atgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataact 46374901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27744309 - 27744357
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    ||||||||||||| || |||||||||||  |||||||||||||||||||    
T  27744309 agaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgt 27744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 4999514 - 4999605
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||| ||||| ||| ||||||| || || | |||||||||||| | ||| | || ||||||||||||| |||| ||||||||||||    
T  4999514 agaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgta 4999605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 38044265 - 38044198
Alignment:
Q  36 acatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||| | | | | ||| ||||||||||||||||| ||||| |||||| |||||||    
T  38044265 acatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataact 38044198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 38267140 - 38267049
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||| ||||||| || || |||||||||||||| | ||| | ||  ||||||||| ||| ||| ||||||||||||    
T  38267140 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgta 38267049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 16374830 - 16374872
Alignment:
Q  10 tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||    
T  16374830 tgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgt 16374872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 2318251 - 2318320
Alignment:
Q  12 tgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccaccta 81  Q
    ||||| ||| || ||||||| |||||| ||||||||||||| | ||| | ||||||||| ||||||||||    
T  2318251 tgcttatgtcgggtccacgtgaccacacgtcagatttttgtgtgggtgtcaagaggtgtcttgccaccta 2318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 32564456 - 32564525
Alignment:
Q  34 ccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgtaacataact 103  Q
    ||||||||||||||||||| | ||| | ||| |||||||||||||||||   ||| |||||| |||||||    
T  32564456 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataact 32564525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 10343598 - 10343654
Alignment:
Q  39 tgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    |||||||||||||| | ||| | |||| ||||||| |||||||| ||||||||||||    
T  10343598 tgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgta 10343654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 35137633 - 35137545
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctat 92  Q
    ||||| |||| ||||| ||| ||||||| || || ||| |||||||||| | ||| | ||  ||||||||||||||||| |||||||||    
T  35137633 agaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctat 35137545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 929 - 1020
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||| ||||| || || |||||| ||||||| | | | ||||  ||||||||||||||||||| ||||||||||    
T  929 agaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgta 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 929 - 1020
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgtctatgta 95  Q
    ||||| |||||||||| ||||| ||||| || || |||||| ||||||| | | | ||||  ||||||||||||||||||| ||||||||||    
T  929 agaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgta 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 17154 - 17106
Alignment:
Q  4 agaaaatgtgcttgtgtgggatccacgtaaccacatgtcagatttttgt 52  Q
    |||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  17154 agaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgt 17106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 10173 - 10208
Alignment:
Q  68 tgtattgccacctaaaggtgtctatgtaacataact 103  Q
    |||||||||||||||||||||||||||| |||||||    
T  10173 tgtattgccacctaaaggtgtctatgtatcataact 10208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 152587 - 152514
Alignment:
Q  15 ttgtgtgggatccacgtaaccacatgtcagatttttgtataggtattaagaggtgtattgccacctaaaggtgt 88  Q
    ||||| ||||||||  | |||||||||||||||||||| | ||| | ||| |||||||||||||| || |||||    
T  152587 ttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgt 152514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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