View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_6 (Length: 621)
Name: NF11073_low_6
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 229 - 606
Target Start/End: Original strand, 364413 - 364790
Alignment:
| Q |
229 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcaccaaacaacaacaacaacactctatctcctctcccatcttcta |
328 |
Q |
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| T |
364413 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcaccaaacaacaacaacaacactctacctcctctcccatcttcta |
364512 |
T |
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| Q |
329 |
tcttgttagtttattacttttacactttttcagttttcactctattaacttataatgttcatacttcattttcagtcatttctaannnnnnnnnnnngca |
428 |
Q |
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| T |
364513 |
tcttgttagtttattacttttacactttttcagttttcactctattaacttataatgttcatacttcattttcaatcatttctaatttttattttttgca |
364612 |
T |
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| Q |
429 |
gttagttatctgttgtattattcttgtaccctattcagcttatttgcaatacaaacttgccaaactcaaggtattattgattgcaccctttaaatttctt |
528 |
Q |
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| T |
364613 |
gttagttatctgttgtattattcttgtaccctattcagcttatttacaatacaaacttgccaaactcaaggtattactgattgcaccctttaaatttctt |
364712 |
T |
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| Q |
529 |
gtttgtgttggattgaatccattgtttatttatcaattcaatttctttggctccaggatatgaaacttcaactctgtg |
606 |
Q |
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| T |
364713 |
gtttgtgttggattgaatccattgtttatttatcaattcaatttctttggctccaggatatgaaacttcaactctgtg |
364790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 364205 - 364348
Alignment:
| Q |
21 |
agagtttcagttactcctcccaatcccaatgacaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactaccctt |
120 |
Q |
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| T |
364205 |
agagtttctgttactcctcccaatcccaatgacaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactaccctt |
364304 |
T |
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| Q |
121 |
ctttccttggcattggcagcacctccagaaaaagaagacaacca |
164 |
Q |
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| T |
364305 |
ctttccttggcattggcagcacctccagaaaaagaagacaacca |
364348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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