View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_7 (Length: 577)
Name: NF11073_low_7
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 14259716 - 14260038
Alignment:
| Q |
30 |
ctctttgtcggattataaacttataaaatctatatttcatgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctcc |
129 |
Q |
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| T |
14259716 |
ctctttgtcagattataagcttatgaaatctatatttcatgtaatagtgatatgaaaatgtttttggtatattttagttatcgattcaaatgtattctcc |
14259815 |
T |
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| Q |
130 |
atggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaa--- |
226 |
Q |
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| T |
14259816 |
atgatcattttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaagg |
14259915 |
T |
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| Q |
227 |
-atgtaattaacaaatttcacaatttcactaaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaatcacggt |
324 |
Q |
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| T |
14259916 |
taagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggt |
14260015 |
T |
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| Q |
325 |
aatcataccaagatgttattcaa |
347 |
Q |
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| T |
14260016 |
gcttataccaagatgttattcaa |
14260038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 14265257 - 14265447
Alignment:
| Q |
43 |
tataaacttataaaatctatatt-tcatgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttg |
141 |
Q |
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| T |
14265257 |
tataaacttataaaatctatattctcacagaatagaaacacgaaaatgtttatggtatattt-agttatcgattcaagtgtattcttcatgaccattttg |
14265355 |
T |
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| Q |
142 |
tggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaaatgtaatta |
235 |
Q |
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| T |
14265356 |
tagatgacttgaccgattttatacta--tggatcttttgacaattcacgtgtggtggtttttcttggaaagatcgagttatggaaatgtaatta |
14265447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 45 - 347
Target Start/End: Complemental strand, 22146239 - 22145934
Alignment:
| Q |
45 |
taaacttataaaatctatattt-catgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttgtg |
143 |
Q |
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| T |
22146239 |
taaacttataaaatctatattttcacggaatagtaacacgaaaatgattatggtatattt-agataccgattcaagtgtattctccatggccgttttgtg |
22146141 |
T |
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| Q |
144 |
gatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaaatgtaattaacaaattt |
243 |
Q |
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| T |
22146140 |
gatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaattatggtaaggtaattaacaaattt |
22146041 |
T |
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| Q |
244 |
cacaatttcact--aaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaatcacggtaatcataccaagatgt |
340 |
Q |
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| T |
22146040 |
cacaaatccggtaaaaaaaaaattaaaactcaaagctaatatatttaggtaaatccaggcatacctactattcaggatcacgataattataccaagatgt |
22145941 |
T |
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| Q |
341 |
tattcaa |
347 |
Q |
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| T |
22145940 |
tattcaa |
22145934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 511 - 573
Target Start/End: Complemental strand, 28537037 - 28536975
Alignment:
| Q |
511 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctctgctcctc |
573 |
Q |
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| T |
28537037 |
agatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctc |
28536975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 573
Target Start/End: Complemental strand, 35686936 - 35686880
Alignment:
| Q |
517 |
agttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctctgctcctc |
573 |
Q |
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| T |
35686936 |
agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctc |
35686880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 564
Target Start/End: Complemental strand, 7723136 - 7723083
Alignment:
| Q |
511 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtct |
564 |
Q |
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| T |
7723136 |
agatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtct |
7723083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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