View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11073_low_8 (Length: 525)
Name: NF11073_low_8
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 49717911 - 49717404
Alignment:
| Q |
1 |
caaattgcagtctcatacggtctattgattcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatggg |
100 |
Q |
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| T |
49717911 |
caaattgtagtctcatacggtcaattgattcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatggg |
49717812 |
T |
|
| Q |
101 |
tactgtttgtgctagatacccatttgtaatccctttccattcccaaaccctaactcgcagattggattgctcaatatcccaattccccctttccagaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49717811 |
tactgtttgtgctagatacccatttgtaatccctttccattcccaaaccctaactcgcagattggattgctcaatctcccaattccccctttccagaatc |
49717712 |
T |
|
| Q |
201 |
acctattcttcttct---agaatcttaattcatcgagtatgttcacgacctgatattgatgatttctactgggagaaagttccaacacccattcttgaca |
297 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49717711 |
acatattcttcttcttctagaatcttaattcatcgagtatgttcacgacctgatattgatgatttctactgggagaaagttccaacacccattcttgaca |
49717612 |
T |
|
| Q |
298 |
cagttcaaaaccctctttgcttgaagaacctttctcagcaagaattgaaacaactagctgctgaaatccgtttagagttgtcttctattttgtcgagcac |
397 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49717611 |
cagttcaaaaccctctttgcttgaagaacctttctcagcaagagttgaaacaactagctgctgaaatccgtttagagttgtcttctattttgtcgggcac |
49717512 |
T |
|
| Q |
398 |
gcaaatattactgaatcctagtatggctgtggtggacctcacagttgcaatacatcatgtttttcatgctccagttgacaagattttgtgggatgtcggt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49717511 |
gcaaatattactgaatcctagtatggctgtggtggacctcacagttgcaatacatcatgtttttcatgctccagttgacaagattttgtgggatgtcggt |
49717412 |
T |
|
| Q |
498 |
gatcaagt |
505 |
Q |
| |
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|||||||| |
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| T |
49717411 |
gatcaagt |
49717404 |
T |
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