View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11073_low_9 (Length: 498)
Name: NF11073_low_9
Description: NF11073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11073_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 125 - 487
Target Start/End: Complemental strand, 30506126 - 30505766
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtttcctagtttctagttcagtttc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30506126 |
tgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtttcctagtttctagttcagtttc |
30506027 |
T |
|
| Q |
225 |
ttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctgt |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30506026 |
ttttcctcctagttttcagcaagca--tttttttttagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctgt |
30505929 |
T |
|
| Q |
325 |
acttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaata |
424 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30505928 |
acttttctatttgtacgtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaata |
30505829 |
T |
|
| Q |
425 |
acaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30505828 |
acaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt |
30505766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 120 - 435
Target Start/End: Original strand, 28914194 - 28914509
Alignment:
| Q |
120 |
gtttttgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttc |
218 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
28914194 |
gtttctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttc |
28914293 |
T |
|
| Q |
219 |
agtttcttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttcta |
318 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
28914294 |
agttttatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttcta |
28914392 |
T |
|
| Q |
319 |
ttctgtacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttac |
418 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28914393 |
ttctgtacttttctatttgtacgtttgaattgaataagaattttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttac |
28914492 |
T |
|
| Q |
419 |
aaaataacaacagtttc |
435 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
28914493 |
aaaatcataacagtttc |
28914509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 26404854 - 26405152
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26404854 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
26404953 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
26404954 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
26405052 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26405053 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
26405152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 26400556 - 26400854
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26400556 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagttt |
26400655 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
26400656 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
26400754 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26400755 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
26400854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 7033625 - 7033923
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7033625 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7033724 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7033725 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
7033823 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7033824 |
tacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
7033923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 7037925 - 7038223
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7037925 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7038024 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7038025 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctattgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
7038123 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7038124 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
7038223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 17793045 - 17793343
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17793045 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
17793144 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
17793145 |
tatttcctccttgttttcagcaatcagtttaactct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
17793243 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17793244 |
tacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
17793343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 17797343 - 17797641
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17797343 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
17797442 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
17797443 |
tatttcctccttgttttcagcaatcagtttaactct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
17797541 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17797542 |
tacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
17797641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 1540923 - 1541221
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
1540923 |
tgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagttt |
1541022 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1541023 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
1541121 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1541122 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
1541221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 1545221 - 1545519
Alignment:
| Q |
125 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
1545221 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
1545320 |
T |
|
| Q |
224 |
cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg |
323 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1545321 |
tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
1545419 |
T |
|
| Q |
324 |
tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat |
423 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1545420 |
tacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat |
1545519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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