View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11074_high_1 (Length: 702)
Name: NF11074_high_1
Description: NF11074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11074_high_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 282 - 702
Target Start/End: Complemental strand, 33117137 - 33116717
Alignment:
| Q |
282 |
cataaactaactcaaactgactcaacccttctgagaggtgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
381 |
Q |
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| T |
33117137 |
cataaactaactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
33117038 |
T |
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| Q |
382 |
tcaattggaacacctttggtttcaggtacgaaaacgaggacaaagaaaattgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaa |
481 |
Q |
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| T |
33117037 |
tcaattggaacacctttggtttctggtacgaaaacgaggacaaaggaacttgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaa |
33116938 |
T |
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| Q |
482 |
tagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttggagccattcctccacagactcctctataccttaaagg |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33116937 |
tagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagg |
33116838 |
T |
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| Q |
582 |
gtaaatctcagagtttatgacccacggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccgatcagtgcaagccaacccaatttg |
681 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33116837 |
gtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttg |
33116738 |
T |
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| Q |
682 |
ctaggacatccttgtgtatac |
702 |
Q |
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| T |
33116737 |
ctaggacatccttgtgtatac |
33116717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 33117355 - 33117205
Alignment:
| Q |
57 |
gtgaataaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtgaaa--------gctctaatttaccaaatgttgagtagcataattt |
148 |
Q |
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| T |
33117355 |
gtgaataaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtgaaacagtgaaagctctaatttaccaaatgttgagtagcataattt |
33117256 |
T |
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| Q |
149 |
tatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
199 |
Q |
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| T |
33117255 |
tatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
33117205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 495 - 635
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
495 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttggagccattcctccacagactcctctataccttaaagggtaaatctcagag |
594 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || |||||| || ||||||||||| | |||||||||||||||||||| || |||||| |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
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| Q |
595 |
tttatgacccacggaacagtccccattccaggtgaaaagaa |
635 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 33117163 - 33117131
Alignment:
| Q |
238 |
attaatgcagatcctaagaaaatagtcataaac |
270 |
Q |
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| T |
33117163 |
attaatgcagatcctaagaaaatagtcataaac |
33117131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 635
Target Start/End: Original strand, 21491884 - 21492014
Alignment:
| Q |
505 |
gattgagaaacaataaggtttgagatccaaacacttgttggagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgaccc |
604 |
Q |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
605 |
acggaacagtccccattccaggtgaaaagaa |
635 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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