View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11074_high_5 (Length: 341)

Name: NF11074_high_5
Description: NF11074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11074_high_5
NF11074_high_5
[»] chr3 (12 HSPs)
chr3 (16-273)||(5454577-5454841)
chr3 (47-273)||(5445995-5446227)
chr3 (143-273)||(5828444-5828574)
chr3 (61-273)||(5502597-5502815)
chr3 (143-273)||(5489772-5489902)
chr3 (144-273)||(5854433-5854562)
chr3 (144-273)||(5849238-5849367)
chr3 (144-273)||(20343230-20343359)
chr3 (143-273)||(5802842-5802972)
chr3 (143-260)||(5484371-5484488)
chr3 (143-273)||(5525415-5525533)
chr3 (47-108)||(5489928-5489989)
[»] chr6 (4 HSPs)
chr6 (47-273)||(25809585-25809817)
chr6 (275-336)||(26452290-26452351)
chr6 (275-336)||(26446503-26446564)
chr6 (288-340)||(13800042-13800094)
[»] chr8 (4 HSPs)
chr8 (270-336)||(24750088-24750154)
chr8 (275-340)||(24744392-24744457)
chr8 (275-336)||(43583571-43583632)
chr8 (275-336)||(43579678-43579739)
[»] chr5 (2 HSPs)
chr5 (275-336)||(21006138-21006199)
chr5 (275-336)||(21011865-21011926)
[»] chr1 (3 HSPs)
chr1 (275-336)||(24502042-24502103)
chr1 (292-336)||(48332730-48332774)
chr1 (294-336)||(32960272-32960314)
[»] chr7 (1 HSPs)
chr7 (291-330)||(7338156-7338195)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 5454841 - 5454577
Alignment:
16 agtaagtatgtacctgggctatttctaagaacaaatgatcatgaatcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagt 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5454841 agtaagtatgtacctgggctatttctaagaacaaatgatcataaatcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagt 5454742  T
116 aagcttctataccttctttttag-------taagcttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagtt 208  Q
    |||||||||||||||||| || |       | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5454741 aagcttctataccttcttgtttgactgacattaacttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagtt 5454642  T
209 attgcattcattataggactaatagttcttgttttggtcacatcagcatataaaaagaagattgg 273  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
5454641 attgcattcactataggactaatagttcttgtattggtcacatcagcatataaaaagaagattgg 5454577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 5446227 - 5445995
Alignment:
47 caaatgatcatgaatcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagtaagcttctataccttcttttt-------agt 139  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| |||||||  ||| |||||| |||||||||||||||||||  ||| ||       | |    
5446227 caaatgatcatgaatcaactcccaaatggaagctgtgttctccatagatgtttttttcttctctttagtaagcttctataccagcttgttgactgacatt 5446128  T
140 aagcttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttg 239  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
5446127 aa-cttcaaccctcagatcataaaaagaataagcagaaattgaagcttgctgggactcttgcaggagttgttgcattcattataggactaaacgttcttg 5446029  T
240 ttttggtcacatcagcatataaaaagaagattgg 273  Q
    | |||||||||||||  |||| ||||||| ||||    
5446028 tattggtcacatcagtgtatagaaagaagcttgg 5445995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 5828444 - 5828574
Alignment:
143 cttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttt 242  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| || |    
5828444 cttcaaccctcagatcataaaaagaataacgagaagttgaagcttgttgggactcttgcaggagttattgcattcattattggactaatcgttctggtat 5828543  T
243 tggtcacatcagcatataaaaagaagattgg 273  Q
    ||| |||||||||||||| ||||||| ||||    
5828544 tggccacatcagcatatagaaagaagcttgg 5828574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 5502815 - 5502597
Alignment:
61 tcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagtaagcttctataccttcttttt-------agtaagcttcaaccctc 153  Q
    |||||||||| ||||||||| |||||||||| ||||  ||| |||||| |||||||  || |||||||||||| ||       | |||  ||||||||||    
5502815 tcaacttccaaatggaagttttgttctctatcgatgtttttttcttctctttagtatactcctataccttcttgttgactgacattaat-ttcaaccctc 5502717  T
154 agatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttttggtcacatca 253  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| || ||| ||||||||    
5502716 agatcataaaaagaataagcggaaattgaagcttgctgggactcttgcaggagttgttgcattcattataggactaaccgttctcgtattgatcacatca 5502617  T
254 gcatataaaaagaagattgg 273  Q
    | ||||| ||||||| ||||    
5502616 gtatatagaaagaagcttgg 5502597  T

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Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 5489902 - 5489772
Alignment:
143 cttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttt 242  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||    
5489902 cttcaaccctcagatcataaagagaataagcggaaattgaagcttgctgggactcttgcaggagttattgcattcattatagtactaagcgttctcgttt 5489803  T
243 tggtcacatcagcatataaaaagaagattgg 273  Q
    || |||||||| |||||| ||||||| ||||    
5489802 tgatcacatcaacatatagaaagaagcttgg 5489772  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 5854433 - 5854562
Alignment:
144 ttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgtttt 243  Q
    ||||| |||||||||||||||||||||||  ||| ||||||| |||||||||| |||||||||||||| |||| |||||||||||||| |||||||| ||    
5854433 ttcaatcctcagatcataaaaagaataagaggaacttgaagcatgctgggactgttgcaggagttattacatttattataggactaatcgttcttgtatt 5854532  T
244 ggtcacatcagcatataaaaagaagattgg 273  Q
    ||||||||||||||||||||||||| ||||    
5854533 ggtcacatcagcatataaaaagaagcttgg 5854562  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 5849238 - 5849367
Alignment:
144 ttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgtttt 243  Q
    ||||||||||||||||||||||||||||||  || ||||||| |||| ||||| |||||||||| ||||| ||||| ||||||||||  |||||||| ||    
5849238 ttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataataggactaaccgttcttgtatt 5849337  T
244 ggtcacatcagcatataaaaagaagattgg 273  Q
    ||| ||||||||||||| | |||| |||||    
5849338 ggttacatcagcatatagagagaaaattgg 5849367  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 20343359 - 20343230
Alignment:
144 ttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgtttt 243  Q
    |||||||||||||||||||||||||||||  ||| ||||||||| |||||| | |||| || ||||||||||| ||||||||||||   ||||| || ||    
20343359 ttcaaccctcagatcataaaaagaataagaggaacttgaagctttctgggatttttgccggggttattgcatttattataggactagccgttctcgtatt 20343260  T
244 ggtcacatcagcatataaaaagaagattgg 273  Q
    |||||| |||||||||| ||||||| ||||    
20343259 ggtcacgtcagcatatagaaagaagcttgg 20343230  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 5802842 - 5802972
Alignment:
143 cttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttt 242  Q
    |||||||| |||||||||||||||||||||  ||| ||||||| ||  ||||||||||||||||||   |||||| ||||   | |||  ||||||||||    
5802842 cttcaaccttcagatcataaaaagaataagaggaatttgaagcgtgtcgggactcttgcaggagtttcggcattcgttatgctattaaccgttcttgttt 5802941  T
243 tggtcacatcagcatataaaaagaagattgg 273  Q
    ||||||||||||||| || ||||||| ||||    
5802942 tggtcacatcagcatctagaaagaagcttgg 5802972  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 5484488 - 5484371
Alignment:
143 cttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttt 242  Q
    ||||||||  ||||||||| |||||||| |   || ||||||| || | ||||| |||||||||||||||||||||| |||||||||   ||||||||      
5484488 cttcaacctacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatccgttcttgtaa 5484389  T
243 tggtcacatcagcatata 260  Q
    |||||| |||||||||||    
5484388 tggtcatatcagcatata 5484371  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 5525533 - 5525415
Alignment:
143 cttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttgttt 242  Q
    |||||||| |||||||||||||||||||||  ||| | |||||||||||||||| | ||||||            |||||||||||||| |||||| | |    
5525533 cttcaaccatcagatcataaaaagaataagaggaactcgaagcttgctgggactgtcgcagga------------attataggactaattgttcttatat 5525446  T
243 tggtcacatcagcatataaaaagaagattgg 273  Q
    |||||||||||| ||||| ||||||| ||||    
5525445 tggtcacatcagtatatagaaagaagcttgg 5525415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 5489989 - 5489928
Alignment:
47 caaatgatcatgaatcaacttccagatggaagttgtgttctctatagatgcatttctcttct 108  Q
    ||||||||||||||| |||| ||| |||||||||||| |||||| |||||| ||| ||||||    
5489989 caaatgatcatgaataaactcccaaatggaagttgtgctctctaaagatgcttttttcttct 5489928  T

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Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 25809585 - 25809817
Alignment:
47 caaatgatcatgaatcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagtaagcttctataccttcttttt-------agt 139  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| |||||||  ||| |||||| |||||||||||||||||||  ||| ||       | |    
25809585 caaatgatcatgaatcaactcccaaatggaagctgtgttctccatagatgtttttttcttctctttagtaagcttctataccagcttgttgactgacatt 25809684  T
140 aagcttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcattataggactaatagttcttg 239  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
25809685 aa-cttcaaccctcagatcataaaaagaataagcagaaattgaagcttgctgggactcttgcaggagttgttgcattcattataggactaaacgttcttg 25809783  T
240 ttttggtcacatcagcatataaaaagaagattgg 273  Q
    | |||||||||||||  |||| ||||||| ||||    
25809784 tattggtcacatcagtgtatagaaagaagcttgg 25809817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 26452351 - 26452290
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26452351 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 26452290  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 26446503 - 26446564
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
26446503 ttaatgcatacgcatgtcccttaacttattttttcttctcacttcagtctcttaacttttaa 26446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 13800042 - 13800094
Alignment:
288 aggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgt 340  Q
    ||||||||||||||||||| | |||||| ||  ||||||||||| ||||||||    
13800042 aggtcccttaacttattttattttctcagtttggtcccttaactattaattgt 13800094  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 24750154 - 24750088
Alignment:
270 ttgggttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
24750154 ttggcttaatgcatacgcaagtcccttaacttattttttcttctcacttcagtcccttaacttttaa 24750088  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 24744392 - 24744457
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgt 340  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
24744392 ttaatgcatacggaggtcccttaacttattttttcttctcacttcagttccttaacttttaattgt 24744457  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 43583632 - 43583571
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
43583632 ttaatacatacgcatgtcccttaatttattttttcttctcacttcagtcccttaacttttaa 43583571  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 43579678 - 43579739
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
43579678 ttaatacatacgcaagtctcttaacttattttttcttctcacttcagtcccttaactattaa 43579739  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 21006138 - 21006199
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
21006138 ttaatacatacgcaggtcccttaacttattttttcttctcactttagtcccttaacttttaa 21006199  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 21011926 - 21011865
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
21011926 ttaatacatacgcaggtcccttaacttattttttcttctcacttcagtcccttaactattaa 21011865  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 24502103 - 24502042
Alignment:
275 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||    
24502103 ttaatgcatccccaggtcccttaatttattttttcttctcacttcattcccttaacttttaa 24502042  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 48332730 - 48332774
Alignment:
292 cccttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
48332730 cccttaacttattttttcttctcacttcagtcccttaactattaa 48332774  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 32960314 - 32960272
Alignment:
294 cttaacttattttttcttctcacttcagtcccttaacttttaa 336  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
32960314 cttaacttattttttcttctcacttcagttccttaactattaa 32960272  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 7338156 - 7338195
Alignment:
291 tcccttaacttattttttcttctcacttcagtcccttaac 330  Q
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7338156 tcccttaacttattttttcttctcacttcaatcccttaac 7338195  T

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