View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11074_high_6 (Length: 251)
Name: NF11074_high_6
Description: NF11074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11074_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 2443066 - 2442837
Alignment:
| Q |
18 |
attgattacctcttagatttacatgtacgtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatgggctacacttga |
117 |
Q |
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| T |
2443066 |
attgattacctctaagatttacatgtacgtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatgggctacacttga |
2442967 |
T |
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| Q |
118 |
tttgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgtta |
217 |
Q |
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| T |
2442966 |
tttgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgtta |
2442867 |
T |
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| Q |
218 |
accttgtttttgtttcaagttcatctcact |
247 |
Q |
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| T |
2442866 |
accttgtttttgtttcaagttcatcacact |
2442837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 50984027 - 50984157
Alignment:
| Q |
46 |
gtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg-ctacacttgatttgtatatgggaaaaataacccacaa |
144 |
Q |
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| T |
50984027 |
gtgttttattggatctaaagtttctcgcaattagat-ggataattctataaacaatcatggggctacacttgatctgtttatgggaaaaataacccac-a |
50984124 |
T |
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| Q |
145 |
aataattggaataaattattacaaaaatatgtg |
177 |
Q |
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| T |
50984125 |
aataattggagtaaattattgcaaaaatgtgtg |
50984157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 34019696 - 34019752
Alignment:
| Q |
48 |
gttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg |
107 |
Q |
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| T |
34019696 |
gttttattggatc--aagtttctcacaattggat-ggataatactataaacaatcatggg |
34019752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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