View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11074_low_4 (Length: 346)
Name: NF11074_low_4
Description: NF11074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11074_low_4 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 48823 - 49144
Alignment:
| Q |
7 |
gtgagaagaagctatcatctcattctactgaagacctacttatttttgactcattaggcccacttgtgatggcttcagttggtgccttacctaagaagcc |
106 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823 |
gtgaaaagaagctatcatc--attctactgaagacctacttattttagactaagtaggcccacttgtgatggcttcagttggtgccttacctaagaagcc |
48920 |
T |
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| Q |
107 |
acccacaacacaaaccnnnnnnnnnnnnccccagcgacgagagtttcacttctaataacaactttccaacagaatcgatcaagatcaagaatgaagcaat |
206 |
Q |
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| T |
48921 |
acccacaacacaaacctatatataca---cccaa--acgagagtttcacttccaataacaactttccaacagaatcgatcaagatcaagaatgaagcagt |
49015 |
T |
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| Q |
207 |
caaaggatccattcgaagcagcattcgaagaatcgccaccagactccccaatcgaaaccgaaccggaacccgtaaacccaaattcaaattccttggtttc |
306 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
49016 |
caaaggatccatttgaagcagcattcgaagaatcaccaccagattccccaaccgaaaccgaaccagaacccgtaaacccaaattccaattccttgatttc |
49115 |
T |
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| Q |
307 |
acaaccctctcaaatccatgaacaacaac |
335 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
49116 |
acaaccctcacaaatccatgaacaacaac |
49144 |
T |
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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 17814713 - 17814789
Alignment:
| Q |
194 |
agaatgaagcaatcaaaggatccattcgaagcagcattcgaagaatcgccaccagactccccaatcgaaaccgaacc |
270 |
Q |
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| T |
17814713 |
agaatgaagcaatcaaaggatccattcgaagcagcattcgaagaatcaccaccagaatccccaattgaaaccgaacc |
17814789 |
T |
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