View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11074_low_8 (Length: 239)
Name: NF11074_low_8
Description: NF11074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11074_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4873782 - 4873901
Alignment:
| Q |
1 |
ttacaataactctctgtggaacgatattcttgtactactcaatagaaccgtacacttgcggattcgtatcaatgtgttcgctaaccacttctatggcttg |
100 |
Q |
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| T |
4873782 |
ttacaataactctctgtagaacgatattcttgtactactcaatagaaccgtacacttgcggattcgtatcaatgtgttcgctaaccacttctatggcttg |
4873881 |
T |
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| Q |
101 |
tcctggggaaaaaagttcac |
120 |
Q |
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| T |
4873882 |
tcctggggaaaaaagttcac |
4873901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 4873897 - 4873962
Alignment:
| Q |
159 |
ttcactaatcaaacatttgtaatttctatgatatagcaattacttatggttcataatgattaaagt |
224 |
Q |
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| T |
4873897 |
ttcactaatcaaacatttgtaatttctatgatatagcaattacttatggttcataatgattaaagt |
4873962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1751637 - 1751706
Alignment:
| Q |
1 |
ttacaataactctctgtggaacgatattcttgtactactcaatagaaccgtacacttgcggattcgtatcaa |
72 |
Q |
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| T |
1751637 |
ttacaataactctctgtggaacgata--cttttactactcgatagaaccatacgcttgcggattcatatcaa |
1751706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3362988 - 3362920
Alignment:
| Q |
1 |
ttacaataactctctgtggaacgatattcttgtactactcaatagaaccgtacacttgcggattcgtatca |
71 |
Q |
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| T |
3362988 |
ttacaataactctctgtgaaacaatatt--tatactactcgatagcaccgtacacttgcggattcgtatca |
3362920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 23483156 - 23483194
Alignment:
| Q |
33 |
tactactcaatagaaccgtacacttgcggattcgtatca |
71 |
Q |
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| T |
23483156 |
tactactcgatagaaccgtacacttgcgaattcgtatca |
23483194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 9797842 - 9797777
Alignment:
| Q |
6 |
ataactctctgtggaacgatattcttgtactactcaatagaaccgtacacttgcggattcgtatca |
71 |
Q |
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| T |
9797842 |
ataactccatgtggattgataatcttttactactcgatagaaccgtatacttgcgaattcgtatca |
9797777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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