View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11075_high_1 (Length: 616)
Name: NF11075_high_1
Description: NF11075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11075_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 3 - 480
Target Start/End: Complemental strand, 1989341 - 1988864
Alignment:
| Q |
3 |
aagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagtactgacactga |
102 |
Q |
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| T |
1989341 |
aagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagtactgacactga |
1989242 |
T |
|
| Q |
103 |
atcttacattttgttgacgattctttggcgttgatcatgttgtatttgagttctccaatcacttgtgtcaatagtgggttcagtagtatctgaagcaacg |
202 |
Q |
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| T |
1989241 |
atcttacattttgttgacgattctatggcgttgatcaggttgtatttgagttctccaatcacttgtgtcaatagtgggttcagtagtatctgaagcaacg |
1989142 |
T |
|
| Q |
203 |
tcaatagtaacatttgaaccttctatgttctccaatggtgcaccaaagtgtgatacgatgtcagattttgggacgtgaatagatttaagtggtggacaat |
302 |
Q |
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| T |
1989141 |
tcaatagtaacatttgaaccttctatgttctccaatggtgcaccaaagtgtgatacaatgtcagattttgggacgtgaatagatttaagtggtggacaat |
1989042 |
T |
|
| Q |
303 |
cagtagcagaaatcatgactccaacagtacagttgaatttcaagcagtcattcttgaggaaatcagagctttcaagcgatgcccgtctgaaaaatcgctt |
402 |
Q |
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| T |
1989041 |
cagtagcagaaatcacgactccaacagtacagttgaatttcaagcagtcattcttgaggaaatcagagctttcaagcaatgcccgtctgaaaaatcgctt |
1988942 |
T |
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| Q |
403 |
gtaccccctacaaaaattcatgaacaagatcaaaattttcacaaatatcaataccacattgtactcttatactgattt |
480 |
Q |
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| T |
1988941 |
gtaccccctacaaaaattcatgaacaagatcaaaattttcacaaataataataccacattgtactctcatactgattt |
1988864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 2018446 - 2018262
Alignment:
| Q |
1 |
tcaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagtactgacact |
100 |
Q |
| |
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||||| ||||||| | ||||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||||||| ||||| | || ||| ||| |
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| T |
2018446 |
tcaagatatggatcggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatactatttaaataacctc--tgatacaatattgatact |
2018349 |
T |
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| Q |
101 |
gaatcttacattttgttgacgattctttggcgttgatcatgttgtatttgagttctccaatcacttgtgtcaatagtgggttcagta |
187 |
Q |
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| T |
2018348 |
gaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcagtagtgggttcagta |
2018262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2021005 - 2020840
Alignment:
| Q |
1 |
tcaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagtactgacact |
100 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||| |||||||||| ||| ||| |||||||||||||||| ||| | |||| |||||| |
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| T |
2021005 |
tcaatttatggattgattattcatttcttaattttcttttgaaatgcaacatg---taaaaatactatttaaataacctc--tgacacagtattgacacc |
2020911 |
T |
|
| Q |
101 |
gaatcttacattttgttgacgattctttggcgttgatcatgttgtatttgagttctccaatcacttgtgtc |
171 |
Q |
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| T |
2020910 |
aaatcttacatattattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaattgtgtc |
2020840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 1988892 - 1988818
Alignment:
| Q |
486 |
aataccacattgtactctcatactgattttaacatgcattgtccttgtccatcaggtgtcagctcagtggaaaaa |
560 |
Q |
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| T |
1988892 |
aataccacattgtactctcatactgattttaacatgcattgtccttgtccatcaagtgtcaactcagtggaaaaa |
1988818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 2035749 - 2035675
Alignment:
| Q |
89 |
agtactgacactgaatcttacattttgttgacgattctttggcgttgatcatgttgtatttgagttctccaatca |
163 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||| |||||||||||||||||| |||| | |||||||||||||||| |
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| T |
2035749 |
agtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatca |
2035675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 203 - 448
Target Start/End: Complemental strand, 37919169 - 37918924
Alignment:
| Q |
203 |
tcaatagtaacatttgaaccttctatgttctccaatggtgcaccaaagtgtgatacgatgtcagattttgggacgtgaatagatttaagtggtggacaat |
302 |
Q |
| |
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|||| |||||||| ||||||||| | ||||||||| ||||||||||||||||| | |||||||||| ||||||||| ||||| |||||| | || |||| |
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| T |
37919169 |
tcaaaagtaacatctgaaccttcattattctccaatagtgcaccaaagtgtgatccaatgtcagattctgggacgtggatagagttaagttgcgggcaat |
37919070 |
T |
|
| Q |
303 |
cagtagcagaaatcatgactccaacagtacagttgaatttcaagcagtcattcttgaggaaatcagagctttcaagcgatgcccgtctgaaaaatcgctt |
402 |
Q |
| |
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|| |||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||| |
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| T |
37919069 |
caacagcagaaaccacaactccaactgtacagttgattttcaagcagtcattcttgaggaaatcagagctttcaagtaaagtccgtctgaaaaaacgctt |
37918970 |
T |
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| Q |
403 |
gtaccccctacaaaaattcatgaacaagatcaaaattttcacaaat |
448 |
Q |
| |
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|||||||||||||||| || ||||||||||| ||||| |||||| |
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| T |
37918969 |
gtaccccctacaaaaacaaataaacaagatcaacatttttacaaat |
37918924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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