View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11075_high_5 (Length: 242)
Name: NF11075_high_5
Description: NF11075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11075_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 42285969 - 42285805
Alignment:
| Q |
78 |
catgtcagaagaaaaagtagnnnnnnnnnctcacagattgagagcaaaaaggttgcaagaggaaaggatctaaggagacaagagtaatgaagagacgagg |
177 |
Q |
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| T |
42285969 |
catgtcagaagaaaaagtagaaaaaaaaactcacagattgagagcaaaaaggttgcaagaggaaaggatctaaggagacaagagtaatgaagagacgagg |
42285870 |
T |
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| Q |
178 |
agaagaaaacaatatacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagc |
242 |
Q |
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| T |
42285869 |
agaagaaaacaatatacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagc |
42285805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 42286030 - 42285997
Alignment:
| Q |
19 |
ttaaagaagctagaaagagctgaaatatatatat |
52 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42286030 |
ttaaagaagctagaaagagctgaaatatatatat |
42285997 |
T |
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