View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11075_low_3 (Length: 348)
Name: NF11075_low_3
Description: NF11075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11075_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 71 - 340
Target Start/End: Original strand, 8991815 - 8992084
Alignment:
| Q |
71 |
tttctacaaaattacttgctacatctatcacgcttcccatcaatttggcgtacatgtaaagtgtcgcgtaataagttgggttcgataccacaattgatgc |
170 |
Q |
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| T |
8991815 |
tttctacaaaattacctgctacatctatcatgcttcccatcaatttggcgtacatgtaaagtgtcgtgtaataagttgggttcgataccacaattgatgc |
8991914 |
T |
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| Q |
171 |
aacattgacaacgacgcttattttccgaaagttgttgacattgacaatcttgagccatggtccatgatcctactccagacatgaattcttctctacaatc |
270 |
Q |
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| T |
8991915 |
aacattggcatcgacgcttattatctgaaagttgttgacattgacaatcctgagccatggtccatgatcctactccagacatgaattcttctctacaatc |
8992014 |
T |
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| Q |
271 |
atttatttgatctttacagcttccatctgctgtaatttctttgagacagtatttagttatagtctctgct |
340 |
Q |
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| T |
8992015 |
atttaattcatctttacagcttccatctgctgtaatctctttgagacaatatttagttacagtctctgct |
8992084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 71 - 340
Target Start/End: Original strand, 9016262 - 9016531
Alignment:
| Q |
71 |
tttctacaaaattacttgctacatctatcacgcttcccatcaatttggcgtacatgtaaagtgtcgcgtaataagttgggttcgataccacaattgatgc |
170 |
Q |
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| T |
9016262 |
tttctacaaaattacctgctacatctatcatgcttcccatcaatttggcgtacatgtaaagtgtcgtgtaataagttgggttcgataccacaattgatgc |
9016361 |
T |
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| Q |
171 |
aacattgacaacgacgcttattttccgaaagttgttgacattgacaatcttgagccatggtccatgatcctactccagacatgaattcttctctacaatc |
270 |
Q |
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| T |
9016362 |
aacattggcatcgacgcttattatctgaaagttgttgacattgacaatcctgagccatggtccatgatcctactccagacatgaattcttctctacaatc |
9016461 |
T |
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| Q |
271 |
atttatttgatctttacagcttccatctgctgtaatttctttgagacagtatttagttatagtctctgct |
340 |
Q |
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| T |
9016462 |
atttaattcatctttacagcttccatctgctgtaatctctttgagacaatatttagttacagtctctgct |
9016531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 8941083 - 8940972
Alignment:
| Q |
160 |
acaattgatgcaacattgacaacgacgcttattttccgaaagttgttgacattgacaatcttgagccatggtccatgatcctactccagacatgaattct |
259 |
Q |
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| T |
8941083 |
acaattgatacaacattgacatcgacgcttattacttgaaagttgttgacattgacaatctttagccatggtccatgatcctactccattaatgaattca |
8940984 |
T |
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| Q |
260 |
tctctacaatca |
271 |
Q |
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| T |
8940983 |
tctgtacaatca |
8940972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 8991779 - 8991810
Alignment:
| Q |
18 |
ttattattaaatttcattaactattaactaca |
49 |
Q |
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| T |
8991779 |
ttattattaaatttcattaactattaactaca |
8991810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 9016226 - 9016257
Alignment:
| Q |
18 |
ttattattaaatttcattaactattaactaca |
49 |
Q |
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| T |
9016226 |
ttattattaaatttcattaactattaactaca |
9016257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 8982455 - 8982500
Alignment:
| Q |
182 |
cgacgcttattttccgaaagttgttgacattgacaatcttgagcca |
227 |
Q |
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| T |
8982455 |
cgacgcttattttccaaaagttcttgacattcacaatcatgagcca |
8982500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 8984230 - 8984271
Alignment:
| Q |
201 |
gttgttgacattgacaatcttgagccatggtccatgatccta |
242 |
Q |
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| T |
8984230 |
gttgttgacattcacaatcttgagtcatggtccaagatccta |
8984271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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