View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11075_low_4 (Length: 274)

Name: NF11075_low_4
Description: NF11075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11075_low_4
NF11075_low_4
[»] chr5 (6 HSPs)
chr5 (1-192)||(29250303-29250497)
chr5 (1-224)||(29566642-29566871)
chr5 (1-83)||(1758842-1758924)
chr5 (1-49)||(38866997-38867045)
chr5 (3-55)||(29169362-29169414)
chr5 (1-49)||(29426337-29426385)
[»] chr4 (5 HSPs)
chr4 (1-124)||(18987701-18987824)
chr4 (1-124)||(27483351-27483474)
chr4 (1-124)||(27519922-27520045)
chr4 (1-117)||(27471585-27471701)
chr4 (1-82)||(27463021-27463102)
[»] chr3 (2 HSPs)
chr3 (1-115)||(25519986-25520103)
chr3 (136-192)||(25519920-25519979)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 29250497 - 29250303
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaagtcatttatgtagtttt 100  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  29250497 taacagcttctttataatcatttcccaattcatcctacaaaaacataaatgaattgttcagcataaaaacaattaatctgaaagccatgtatatagtttt 29250398  T
Q  101 aacttgttgtcgccataactacatgccaaacgcagttgtagctgcattactcaca---ctttgtaattttccacaaaatatcaagaatcgtcaca 192  Q
    ||||||||||| ||||||||||||  |||||||| ||||| ||||||||||||||   |||||||||||||||||  |||||||||||| |||||    
T  29250397 aacttgttgtcaccataactacatcgcaaacgcaattgtacctgcattactcacacttctttgtaattttccacaccatatcaagaatcatcaca 29250303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29566642 - 29566871
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattg-ttcagcatcaaaa--caattaatctgaaagtcatt---tatgt 94  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||  || || || ||||  ||||||||||||||||||||   |||      
T  29566642 taacagcttcttcataatcatttcccaattcatcctgcaaaaacataaatgaattcatttagtatgaaaaagcaattaatctgaaagtcattatgtatac 29566741  T
Q  95 agttttaacttgttgtcgccataactacatgccaaacgcagttgtagctgcattactcacactttgtaattttccacaaaatatcaagaatcgtcacagt 194  Q
    ||||||||||||||||||  ||||||||||  ||||||||  ||||||||||||  ||| ||||||| ||||||||||||||||||||||||  ||||      
T  29566742 agttttaacttgttgtcgatataactacatcgcaaacgcaactgtagctgcatttatcaaactttgtgattttccacaaaatatcaagaatcaccacaaa 29566841  T
Q  195 tatggtttttagctgcggtttgcaaccgca 224  Q
     |||||||| | ||||||||| || |||||    
T  29566842 catggttttaaactgcggtttacagccgca 29566871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1758924 - 1758842
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaa 83  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| ||||||||||||    
T  1758924 taacagcttcttcataatcattttccaattcatcctacaaaaacaaaaatgaattgttcagcataaaaactattaatctgaaa 1758842  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38866997 - 38867045
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaa 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38866997 taacagcttcttcataatcatttcccaattcatcctacaaaaacataaa 38867045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29169414 - 29169362
Alignment:
Q  3 acagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaatt 55  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  29169414 acagcttcttcataatcatttcccaattcatcctacaaaatcataaatgaatt 29169362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29426385 - 29426337
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaa 49  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  29426385 taacagcttcttcataatcatttcccgattcatcctacaaaaacataaa 29426337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 18987824 - 18987701
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaagtcatttatgtagtttt 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||  ||||||||||||| ||||| |||||||||||| |||| ||| |||||||    
T  18987824 taacagcttcttcataatcatttcccaattgatcctacaaaaacaaaaaacaattgttcagcataaaaactattaatctgaaactcatgtatatagtttt 18987725  T
Q  101 aacttgttgtcgccataactacat 124  Q
    ||||||||||||||||||||||||    
T  18987724 aacttgttgtcgccataactacat 18987701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27483474 - 27483351
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaagtcatttatgtagtttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||||| ||||| |||||||| |||||||| ||| |||||||    
T  27483474 taacagcttcttcataatcatttcccaattcatcctacaaaaacaaaaatcaattgttcagcataaaaactattaatcttaaagtcatgtatatagtttt 27483375  T
Q  101 aacttgttgtcgccataactacat 124  Q
    ||||||||||| ||||||||||||    
T  27483374 aacttgttgtctccataactacat 27483351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27519922 - 27520045
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaagtcatttatgtagtttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||| ||||| ||||||||||||||||| | | |||||||    
T  27519922 taacagcttcttcataatcatttcccaattcatcctacaaaaacaaaaatgaactgttcagcataaaaactattaatctgaaagtcatgtttatagtttt 27520021  T
Q  101 aacttgttgtcgccataactacat 124  Q
    ||||||||||||||| ||||||||    
T  27520022 aacttgttgtcgccaaaactacat 27520045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27471701 - 27471585
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaaagtcatttatgtagtttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||  ||||||||||||| ||||| |||||||| |||||||| ||| | |||||    
T  27471701 taacagcttcttcataatcatttcccaattcatcctacaaaaataaaaatcaattgttcagcataaaaactattaatcttaaagtcatgtatatcgtttt 27471602  T
Q  101 aacttgttgtcgccata 117  Q
    |||||||||||||||||    
T  27471601 aacttgttgtcgccata 27471585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27463102 - 27463021
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaattgttcagcatcaaaacaattaatctgaa 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||||| ||||| |||||||||||    
T  27463102 taacagcttcttcataatcatttcccaattcatcctacaaaaacaaaaatcaattgttcagcataaaaactattaatctgaa 27463021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 25520103 - 25519986
Alignment:
Q  1 taacagcttcttcataatcatttcccaattcaacctacaaaaacataaacgaa-ttgttcagcatcaa--aacaattaatctgaaagtcatttatgtagt 97  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |  |||||||| ||  || ||||| |||   |||||| ||| ||||    
T  25520103 taacagcttcttcataatcatttcccaattcatcctacaaaaacataaatgaactcattcagcatgaaacaaaaattagtctaggagtcatatatatagt 25520004  T
Q  98 tttaacttgttgtcgcca 115  Q
    ||||||||||| ||||||    
T  25520003 tttaacttgttatcgcca 25519986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 25519979 - 25519920
Alignment:
Q  136 ttgtagctgcattactcacactt---tgtaattttccacaaaatatcaagaatcgtcaca 192  Q
    |||||||||||||| |||| |||   |||  |||||||||||||||||||||||||||||    
T  25519979 ttgtagctgcattaatcactcttcattgtgcttttccacaaaatatcaagaatcgtcaca 25519920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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