View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11076_low_1 (Length: 384)
Name: NF11076_low_1
Description: NF11076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11076_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 32084629 - 32084798
Alignment:
| Q |
7 |
gaagcaaaggaggaacggtggcggggaaagaatcagaagccatggcggaaatgagggtggttttgccggcggatttgtcaccaacaatgacgattctaac |
106 |
Q |
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| T |
32084629 |
gaagcaatggaggaacggtggcggggaaagaatcagaagccatggcggaaatgagggtggttttgccggcggatttgtcaccaacaatgacgattctaac |
32084728 |
T |
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| Q |
107 |
ttccttgagaattgtggtgttgcggttattcgccattggaattggaattgagaaaacgagagaagaaggg |
176 |
Q |
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| T |
32084729 |
ttccttgagaattgtggtgttgcagttattcgccattggaattggaattgagaaaacgagagaagaaggg |
32084798 |
T |
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Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 225 - 369
Target Start/End: Original strand, 32084847 - 32084991
Alignment:
| Q |
225 |
atatgcgtatctagaaatggacttgcgtgcgagggacatggatattgattgtatgaagaatatatcgttagattttatgttagaatttaattctagaagt |
324 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32084847 |
atatgcgtatctagaaatggacatgcgtgcgagggacatggatattgattgtatgaagaatgtatcgttagattttatgttagaatttaattctagaagt |
32084946 |
T |
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| Q |
325 |
ccaacataaaactagaaaaacattagtcaacaagaaataattctt |
369 |
Q |
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| T |
32084947 |
ccaacataaaactagaaaaacattagtcaacaagaaataattctt |
32084991 |
T |
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