View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11076_low_6 (Length: 218)
Name: NF11076_low_6
Description: NF11076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11076_low_6 |
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| [»] scaffold0007 (3 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 34836 - 35006
Alignment:
| Q |
19 |
atattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttaccacctctgactgatggaagagattaatgca |
118 |
Q |
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| T |
34836 |
atattcatgctatcaatgtggattccttagatgaattcgattattcaggatgtgagagtctcgagtttcccacctctgactgatggaagagattaatgca |
34935 |
T |
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| Q |
119 |
gtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat |
189 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34936 |
gtttacaccatttcattgtgtcaactcaagagcactcccattactaggtagctctttaaaaagatatttat |
35006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 40149 - 40319
Alignment:
| Q |
19 |
atattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttaccacctctgactgatggaagagattaatgca |
118 |
Q |
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| T |
40149 |
atattcatgctatcaatgtggattccttagatgaattcgattattcaggatgtgagagtctcgagtttcccacctctgactgatggaagagattaatgca |
40248 |
T |
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| Q |
119 |
gtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat |
189 |
Q |
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| T |
40249 |
gtttacaccatttcattgtgtcaactcaagagcactcccattactaggtagctctttaaaaagatatttat |
40319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 70668 - 70838
Alignment:
| Q |
19 |
atattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttaccacctctgactgatggaagagattaatgca |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || ||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
70668 |
atattcatgctatcaatgtggcttccttagatgagttctatcattcaggatgtgagagtgtcaagtttaccacctctgactgatggaagagattaatgca |
70767 |
T |
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| Q |
119 |
gtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat |
189 |
Q |
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| T |
70768 |
gtttataccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat |
70838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 28906081 - 28906249
Alignment:
| Q |
27 |
gctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttaccacctctgactgatggaagagattaatgcagtttacac |
126 |
Q |
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|||||||| |||| |||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
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| T |
28906081 |
gctatcaacgtggattccctagatgaattcgatcattcaggatgtgagagtctcgagttttccacctctgactgatggaagatattaatgcagtttactc |
28906180 |
T |
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| Q |
127 |
catttcattctgtcaactcaagagcactcccattactaggt-agctctttaaaaagataattatgaacc |
194 |
Q |
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| T |
28906181 |
cgcttcattctgtcaactcaagaccactcccattactaggtaagctctttgaaaaggtaattatgaacc |
28906249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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